Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16880 372 / 2e-130 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT5G04740 288 / 2e-97 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT3G01990 58 / 2e-09 ACR6 ACT domain repeat 6 (.1) AT2G03730 55 / 2e-08 ACR5 ACT domain repeat 5 (.1.2) AT1G69040 54 / 4e-08 ACR4 ACT domain repeat 4 (.1.2) AT5G65890 53 / 9e-08 ACR1 ACT domain repeat 1 (.1.2) AT1G76990 44 / 6e-05 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 42 / 0.0004 ACR8 ACT domain repeat 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033395 [exp] 498 / 3e-180 AT1G16880 375 / 1e-131 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10033394 [exp] 360 / 9e-126 AT1G16880 357 / 9e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034851 [exp] 357 / 9e-125 AT1G16880 351 / 3e-122 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10041543 [exp] 60 / 7e-10 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 58 / 2e-09 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 53 / 1e-07 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 50 / 9e-07 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 49 / 2e-06 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 49 / 2e-06 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248700 [exp] 377 / 2e-132 AT1G16880 363 / 4e-127 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.008G010400 [exp] 372 / 1e-130 AT1G16880 359 / 1e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.010G238300 [exp] 292 / 8e-99 AT5G04740 392 / 6e-138 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.008G020700 [exp] 284 / 1e-95 AT5G04740 370 / 1e-129 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.001G327000 [exp] 59 / 8e-10 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.012G083000 [exp] 58 / 2e-09 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 58 / 2e-09 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 57 / 3e-09 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 54 / 4e-08 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 54 / 5e-08 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034852 pacid=23142195 polypeptide=Lus10034852 locus=Lus10034852.g ID=Lus10034852.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTGCTGCTGCTGCTTCAACTTTAGTTGCTAATTCTGGGCTTTACCCTGCTGCTGACAATCTCCCCTTGTCTTTGGGTTTCGCTGCCACTC CCACCTCTCTTTCCTTCAATCAAATTGGTGATTGTTGTGTTCTAGGAAACTCATCAATCCTCGAGCATCAACAACAGCAGTTGAGGTGGGCAGGCTGGCT GTTGTTGGGTTCCAATGGTACTGATACAGTTCCAACTCCAAAGGTCATAATCGACCAGGACTCTGATCCTGATGCTACTGTCGTCGAGATCACCTTTGGG GATCGCCTTGGAGCTCTTCTTGATACTATGAATGCCCTCAAGAACCTCGGTCTGAATGTTGTTAAAGCTAATGTCTTTCTTGATGCTTCTGGCAAGCACA ACAAATTTGCCATCACTAAAGTGAGCACTGGCAGAAAAGTTGATGATCCGGAGCTGCTTGAAGCAATTCGTTTGACAATTATAAACAATCTGCTTGAGTA TCATCCGGAATCAAGTTCACAGCTGGCAATGGGGGCTGCATTTGGCATAGAGCCACCTAAAGAAAAGCTTGACGTGGATATATCAACCCACATAACCATC TCTGATGATAGTGCAGAACGAAGCTTACTATACGTGGAGTCGGCTGATCGCCCTGGATTACTGGTCGATCTTGTAAAGATCATCTCAGATATTAACATTG CAGTGGAATCTGGAGAGTTCGACACTGAGGGGTTACTAGCTAAGGCAAAGTTCCATGTGAGCTACAAGGGTAAAGCAATCATCAAGCCCCTCCAACAGGT TCTGACTAACAGCCTCCGATACTTCCTAAGGCGGCCAACGACTGAGGATGCTAGTTTTTGA
AA sequence Show only first row Show all	>Lus10034852 pacid=23142195 polypeptide=Lus10034852 locus=Lus10034852.g ID=Lus10034852.BGIv1.0 annot-version=v1.0 MAAAAAAASTLVANSGLYPAADNLPLSLGFAATPTSLSFNQIGDCCVLGNSSILEHQQQQLRWAGWLLLGSNGTDTVPTPKVIIDQDSDPDATVVEITFG DRLGALLDTMNALKNLGLNVVKANVFLDASGKHNKFAITKVSTGRKVDDPELLEAIRLTIINNLLEYHPESSSQLAMGAAFGIEPPKEKLDVDISTHITI SDDSAERSLLYVESADRPGLLVDLVKIISDINIAVESGEFDTEGLLAKAKFHVSYKGKAIIKPLQQVLTNSLRYFLRRPTTEDASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	0	1
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	1.0	0.9783
AT5G52190			Sugar isomerase (SIS) family p...		Lus10038873 [exp]	4.9	0.8795
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	6.9	0.9130
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	8.6	0.9191
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	8.7	0.9144
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	9.5	0.9027
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034264 [exp]	11.0	0.8646
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	11.4	0.8953
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	19.2	0.8860
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	19.5	0.7909

Compare expression of checked genes

Lus10034852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.