Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55730 573 / 0 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 563 / 0 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 524 / 0 ATCAX6 cation exchanger 6 (.1) AT5G01490 343 / 1e-111 ATCAX4, CAX4 cation exchanger 4 (.1) AT2G38170 330 / 2e-106 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT3G51860 329 / 3e-106 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT1G53210 45 / 0.0002 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033396 [exp] 971 / 0 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 555 / 0 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10027136 [exp] 535 / 0 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10009431 [exp] 426 / 4e-145 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10032889 [exp] 378 / 8e-126 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10027791 [exp] 333 / 1e-107 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 324 / 4e-104 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 319 / 3e-102 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 316 / 2e-101 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249200 [exp] 688 / 0 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.001G469800 [exp] 562 / 0 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 561 / 0 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.016G115500 [exp] 350 / 2e-114 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 344 / 3e-112 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 324 / 2e-104 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 321 / 3e-103 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.001G375500 [exp] 42 / 0.001 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10034853 pacid=23142243 polypeptide=Lus10034853 locus=Lus10034853.g ID=Lus10034853.BGIv1.0 annot-version=v1.0 ATGGCGCTATTTCTGAGAAACTTCCCTGCACTACAACTTCCTTGCTTTGCCCAAAATCCAAATCTGACGACTAACTTCTCCTCTGTCATCCCCACCAAGA CCACTCTTTTTTTTTTCAATCTAACTTTGCCCACTTTCTCCCTTGTTAGTAGTGCTTCTCCAATTCATTCATCCATCCATCCATCTGTCCCTCCCTCTCT TGACAATTTCAAAGTTGCCCCTCAAAAGCTTAAGATCTCACAACTTCATCTCAACTGCCGGCGAGGCCAACTATTCAGATCAGCCTTTCCGCCATACTTC TATAGCTTCCTGTCTGCATCAGTTATGGGTTCTATGGATGAGAAAGTAACAGTTGCAGCATCAGAATCTGGTGATGAGGAGATGGAGATCCTGTTCAGTG TATCCTCCCCGAGTAGGAGGAAATCGGCTACTTTTGACTTCGAGAGTGAGACATTGCCACTGAGTTCTTCGAATCATTCCTCCCGTACTGATCATTTGGC CAACTCCTGGATTGTCAAGCGGATGGAGATGAGCCCTTTGCGATCTTTTTACATTGTTTTGATTAGAGCTAAGATCAACGTGTTGCTCCCTTTTGGTCCC CTGGCAATCTTGCTTCATTACTTCACTGGAAAGCATGTGTGGGTTTTCTTCTTTAGTTTAGTTGGGATTGTACCTCTAGCTGAACGGCTTGGTTATGCCA CCGAGCAGCTTGCATACTACACTGGATCAACAGTTGGCGGTCTTCTGAATGCAACCTTTGGAAATGCGACTGAAATGATAATATCTATTTATGCGCTGAA GAGTGGAATGGTGCGAGTTGTTCAGCAATCTTTGCTGGGCTCCATCTTATCTAATATGCTATTGGTACTTGGATTTTCCTTCTTCACTGGTGGGATTGTT CATCACAAAAAGGTTCAGGTTTTCAACAAGGCAGCTGCTGTGGTGAACTCTGGACTATTATTAATGGCTGTGATGGGGATCATGTTTCCAGCAGTGCTTC ACTTCACACGGACTGAAGTCCATTTTGGGAAGTCGGAAATGTCACTTTCAAGATTCAGTAGCTGCATTATGCTAGTCGCTTACGGAAGCTACCTCTTCTT CCAACTTAAGAGTCAACATAATCTGTATGGTCCTATGGATGAGGGAGCGAACAATGATCAAGAAGATCAAGATGAAGAAGTACCAGAAATAACGAAATGG GAATCCATTGGTTGGCTTGCAGTTTTGACTTTGTGGATCTCTGTGCTGTCTGCATACCTTGTCGATGCCATCCAGGGAGCATCTGAGTCGCTGAATATGC CTATGGCTTTTATAAGCGTGATCCTACTCCCTATTGTCGGAAATGCTGCTGAGCATGCTAGTGCTATCATGTTTGCTATGAAGGACAAGCTTGACATCAG CCTTGGCGTCGCTATTGGATCCTCAACACAGATCTCCATGTTTGTGATTCCATTCTGCGTCGTTGTTGGGTGGATAATGGGGCAGCCAATGGACTTGAAC TTTCAACTCTTTGAGACAGCTACCCTATTTATCACTGTTCTAGTTGTGGCATTCATGCTGCAGGAAGGAACTTCTAACTATTTTAAAGGCCTTATGCTCA TCCTGTGCTATCTTATCGTTGCGGCGAGTTTCTTCGTGCATGTTGACCATTCGAGCGGAAGTCCGACTTGTTCCAAGAGAAGTGGAATGCTGTTTTTATT ACACATGGGGAATGAGAAGCAGTCAGTCCCTTGTAAAGCTGGGAAATTTTGTTTCTTGGACGATCACATCAACGGCTATTGTCATACGTCCTGCTCTGGA AGTCTTAGGGATGGTGTTGATATGATGGCTAGACCACAGTTGCATTCTTCATTTTTGTCTTGTTGGTGGAGAGCTTGGTATGTTGGCATCAATGGCTGGC CTTCCTTTCAACGCAAGTTGTGA
AA sequence Show only first row Show all	>Lus10034853 pacid=23142243 polypeptide=Lus10034853 locus=Lus10034853.g ID=Lus10034853.BGIv1.0 annot-version=v1.0 MALFLRNFPALQLPCFAQNPNLTTNFSSVIPTKTTLFFFNLTLPTFSLVSSASPIHSSIHPSVPPSLDNFKVAPQKLKISQLHLNCRRGQLFRSAFPPYF YSFLSASVMGSMDEKVTVAASESGDEEMEILFSVSSPSRRKSATFDFESETLPLSSSNHSSRTDHLANSWIVKRMEMSPLRSFYIVLIRAKINVLLPFGP LAILLHYFTGKHVWVFFFSLVGIVPLAERLGYATEQLAYYTGSTVGGLLNATFGNATEMIISIYALKSGMVRVVQQSLLGSILSNMLLVLGFSFFTGGIV HHKKVQVFNKAAAVVNSGLLLMAVMGIMFPAVLHFTRTEVHFGKSEMSLSRFSSCIMLVAYGSYLFFQLKSQHNLYGPMDEGANNDQEDQDEEVPEITKW ESIGWLAVLTLWISVLSAYLVDAIQGASESLNMPMAFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVVGWIMGQPMDLN FQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDHSSGSPTCSKRSGMLFLLHMGNEKQSVPCKAGKFCFLDDHINGYCHTSCSG SLRDGVDMMARPQLHSSFLSCWWRAWYVGINGWPSFQRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	0	1
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	2.2	0.9058
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	5.5	0.8604
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	5.7	0.8812
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	7.7	0.8671
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	10.0	0.8656
AT3G14910			unknown protein		Lus10011169 [exp]	10.6	0.8513
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	13.5	0.8151
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10000334 [exp]	17.2	0.8356
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	17.9	0.8487
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	20.6	0.8564

Compare expression of checked genes

Lus10034853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.