Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04990 410 / 5e-140 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) AT3G10730 394 / 8e-134 ATSUN2 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 2, SAD1/UNC-84 domain protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028885 [exp] 621 / 0 AT5G04990 426 / 2e-146 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Lus10008933 [exp] 618 / 0 AT5G04990 428 / 5e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010900 [exp] 498 / 2e-174 AT5G04990 400 / 4e-136 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Potri.010G247900 [exp] 493 / 6e-173 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10034856 pacid=23142309 polypeptide=Lus10034856 locus=Lus10034856.g ID=Lus10034856.BGIv1.0 annot-version=v1.0 ATGTCCGCTTCGACTGTGTCTATCACGGCGAACCCCGCCACGACTCGTCGGAGGCCTGTCGAGAAGAAGTCCAACGCCGTCGAGCTGTTGCCCAACGAAG CGCAACCAAATATCGGAAGCGGCGAAAACGCTAGAAATGCGAATGGGAACGATAAGGATCTTAGCCATAATACGATCCGCGTGGACGCAATTCTCGAGAG GACGTCCAAAGATCCGGTCCCTATGAAGAAGGCGAACAACACGGGGGTTACTTCGACGATTTCTCCTCGCAGGGGACGGAAACCGGCGACTCCTAAGCCT GAAGAGCCGCGGTGGGTGACGGTTGCGAGAATTTTTACCAAGAATTTTGTGCTTCTGCTAGTGTTGCTTGGGTTAGTGCAGTTGATTAGGAAGTTCGCTA CGAAACCGGATATCCAATTGGCTGGAACGACTGTGACAGGGTTGGCTGAGATCGAGAGTCGTATCGCGGAAGTGGAGACGTTCTTGAAAACAACCGCGAA AATGATTCAGGTCCAGGTGGAAGCTGTAGATAGGAAAGTCGATAACGAGGTAGGAGGTCTAAGGCATGAAGTGAACGAGAAGCTCGAGTCTACCGAAATG AATTTGGATTCGGCGTTGAAGAATTTGGAAACGAAGAGTGAAGAATTGGAGAAGTCAATAGCGGAGTTGAAGGCAGCGGATTGGTTGACCAAGGAGGATT TTGGGAAGTTTGTCGAGGAAGTGAAGAAGACGACTGGGTTTCAGGCTGGGGAAGACTCCTACAGTTTGGATGTTATAAGAGCTTATGCAAAGGAGATAGT CGAGAAGGAAATCGAGAAGCATGCTGCTGATGGACTTGGAAAGGTGGATTATGCGCTTGCTGAAGGTGGGGCTGCTGTGGTGAAGCATTCTGAGCCGTTT GGTAACGGTAAGCTCCTTGCAGGCTGGTTGTCAGGTACTCGTGGGGTTCATCCTGACGCGTATAAGATGTTGAAGCCGAGTTTTGGAGAGCCGGGTCAGT GCTTTCCGCTGAAAGGAGCCAGTGGATTTGTGGAGATTAGGCTTCGTAAAGCAATTGTTCCTGAGGCTTTTACGTTGGAGCATGTTGCCAAGAATGTTGC TTATGATCGGTCAAGTGCGGTAAAGGACTGTCGTGTGTCTGGCTGGTTAAGAGGGACTGATAATACTTCACCTCCTGGCGAAACGATGTTTCTCCTCTCA GAGTTCAGTTACGACCTGGAGAAGAGCAATGCTCAGACCTTCAATGTTCAAGACTCTGCAGCCTCCCATGTGGTCGACACTGTCAGGTTGGACTTCACAT CTAACCATGGGAACGGCGGCCACACGTGTATCTACCGCTTCAGGGTTCATGGTTATGAACCTGAACCTGTTTCAATGACGGCAATCGAAAATCGACATTA G
AA sequence Show only first row Show all	>Lus10034856 pacid=23142309 polypeptide=Lus10034856 locus=Lus10034856.g ID=Lus10034856.BGIv1.0 annot-version=v1.0 MSASTVSITANPATTRRRPVEKKSNAVELLPNEAQPNIGSGENARNANGNDKDLSHNTIRVDAILERTSKDPVPMKKANNTGVTSTISPRRGRKPATPKP EEPRWVTVARIFTKNFVLLLVLLGLVQLIRKFATKPDIQLAGTTVTGLAEIESRIAEVETFLKTTAKMIQVQVEAVDRKVDNEVGGLRHEVNEKLESTEM NLDSALKNLETKSEELEKSIAELKAADWLTKEDFGKFVEEVKKTTGFQAGEDSYSLDVIRAYAKEIVEKEIEKHAADGLGKVDYALAEGGAAVVKHSEPF GNGKLLAGWLSGTRGVHPDAYKMLKPSFGEPGQCFPLKGASGFVEIRLRKAIVPEAFTLEHVAKNVAYDRSSAVKDCRVSGWLRGTDNTSPPGETMFLLS EFSYDLEKSNAQTFNVQDSAASHVVDTVRLDFTSNHGNGGHTCIYRFRVHGYEPEPVSMTAIENRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10034856 [exp]	0	1
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10027288 [exp]	1.7	0.8629
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	6.0	0.8435
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	9.5	0.8566
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	10.6	0.8231
AT5G42360			Galactose oxidase/kelch repeat...		Lus10030733 [exp]	12.0	0.8341
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	13.2	0.8539
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	14.8	0.8415
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	17.0	0.7996
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	19.9	0.7986
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	21.5	0.8341

Compare expression of checked genes

Lus10034856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.