Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04980 527 / 0 DNAse I-like superfamily protein (.1.2) AT5G65090 464 / 8e-161 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 339 / 2e-110 CVL1 CVP2 like 1 (.1.2) AT3G63240 331 / 7e-108 DNAse I-like superfamily protein (.1) AT1G05470 330 / 9e-107 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G37440 298 / 4e-97 DNAse I-like superfamily protein (.1.2) AT1G34120 263 / 4e-81 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G01900 251 / 1e-78 DNAse I-like superfamily protein (.1) AT1G71710 255 / 3e-77 DNAse I-like superfamily protein (.1.2) AT4G18010 253 / 4e-77 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033398 [exp] 875 / 0 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 735 / 0 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 493 / 1e-175 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10024041 [exp] 409 / 3e-128 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10006904 [exp] 383 / 1e-127 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 380 / 2e-127 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 383 / 9e-122 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10041708 [exp] 356 / 1e-117 AT5G65090 469 / 2e-161 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 337 / 2e-112 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247800 [exp] 642 / 0 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 624 / 0 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 488 / 7e-169 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 465 / 5e-160 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 419 / 8e-142 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 414 / 7e-140 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.005G212700 [exp] 405 / 1e-136 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 399 / 2e-134 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 291 / 2e-93 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.015G032200 [exp] 278 / 3e-88 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10034857 pacid=23142170 polypeptide=Lus10034857 locus=Lus10034857.g ID=Lus10034857.BGIv1.0 annot-version=v1.0 ATGGCCAACAAAGACCTCAGGAAACGGTCTTTCCTTCAGAAGATTTTCTCGTCAAAGGAAGTCAATGTCAGGAGGAGATCCACAAAAGATCCATTCAATT CTCCTGATGGTGAGACTTTTATCATATGCTCTACATTAATAGCTTGTTATCATTGCATATGGCATCAGATTTCATCCCATTGTGAAACACGAGATGCCAA TATTCTTAAGCCATTAATTTTTGTGGCAACATGGAATGTGGGAGGAAAATCTCCCCATAGTGGACTCAATCTGGATGATATTCTTCAAGTTCACAACCAA GCAGATATATATGTCTTAGGTTTCCAGGAAATTGTTCCACTGAATGCAGGGAATATCCTTGTGGCAGAAGACAATGAGCCAGCTGCAAAGTGGTTAGCTT TGATCAACCGGTCTCTGAACAAATCATATGATGATGTAGGGTCAAAGCCCTTTGCCTCTCTAGCAACTCCACTTCCCTTTCAGAAGCCATCTCTTAGGAA GACCTGCAAGAGCTTCAGGACCGAGAGTGTTCGTCGTCTTAAGACCTGCAACTGCAGTTTTGCAATGGACAGGAGGCAGAACAAGGACTTTTGTCTTTGG TGTCCACAGACTAATTTAGGGGACGATGGGTTCTCATCAGATGAGGACGAGGATGGACTTAACAGCTATGGATCTTCATACATTACTGCTGCTAATGGTG GCAATCAATTGAGATACAGCCTTATTGTTGGGAAGCAAATGGTTGGGATTTTTCTGACTGTTTGGATGAAGAAGGAGCTTGTTCAGCATGTCGGTCACTT ACGAGTTTCTTACATTAGTCGAGGAATCATGGGTTGCCTTGGCAACAAGGGTTGCATATCTGTGAGCATGTCTTTCCATCAGACAACCTTTTGTTTCATC TGTAGTCACTTGGCATCTGGAGAGAAAGAAGGAGATGAACTTAGGAGGAATTTGGATGTGATTGAGATACTCAAGAACACTCAATTCCCCAGGATTTGCA AATCACCCTTCAGCAACTTGCCTGAGAGAATCATCCAGCATGACCGGATCATATGGCTAGGTGACCTCAACTACAGAATAGCTTTGAATTATTCTGAGAC TCGAAAGCTTCTTATACGTAATGATTGGAATGCCTTGTTCGACAAAGACCAGTTGAAGATTGAGAGGGACAAAGGCAGAGTGTTCAAGGGATGGAAAGAA GGGAAGATCTACTTTGCACCAACATACAAATACTCGTGGAACTCGGACATCTATGCCGGAGAAGCTGTAGACTCCAAGAACAAAAGAAGAACTCCTGCTT GGTGTGACAGGATACTGTGGCACGGAAGTGGGATGCAACAGATGTCCTACGTGAGGAAGGAATACCGGTTTTCGGATCACAGACCGGTATGTGCAACATT CCTGGTTGATGTAGACACTTTGGAGGTTTCTTCCAGGAGGGCGTCATCTGCATACTATAACATATGA
AA sequence Show only first row Show all	>Lus10034857 pacid=23142170 polypeptide=Lus10034857 locus=Lus10034857.g ID=Lus10034857.BGIv1.0 annot-version=v1.0 MANKDLRKRSFLQKIFSSKEVNVRRRSTKDPFNSPDGETFIICSTLIACYHCIWHQISSHCETRDANILKPLIFVATWNVGGKSPHSGLNLDDILQVHNQ ADIYVLGFQEIVPLNAGNILVAEDNEPAAKWLALINRSLNKSYDDVGSKPFASLATPLPFQKPSLRKTCKSFRTESVRRLKTCNCSFAMDRRQNKDFCLW CPQTNLGDDGFSSDEDEDGLNSYGSSYITAANGGNQLRYSLIVGKQMVGIFLTVWMKKELVQHVGHLRVSYISRGIMGCLGNKGCISVSMSFHQTTFCFI CSHLASGEKEGDELRRNLDVIEILKNTQFPRICKSPFSNLPERIIQHDRIIWLGDLNYRIALNYSETRKLLIRNDWNALFDKDQLKIERDKGRVFKGWKE GKIYFAPTYKYSWNSDIYAGEAVDSKNKRRTPAWCDRILWHGSGMQQMSYVRKEYRFSDHRPVCATFLVDVDTLEVSSRRASSAYYNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	0	1
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	3.2	0.8180
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	5.6	0.8250
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	6.3	0.8150
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	11.2	0.8180
AT1G59650		CW14	Protein of unknown function (D...		Lus10005831 [exp]	13.1	0.7146
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	13.3	0.7503
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001842 [exp]	19.4	0.6861
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	19.5	0.7561
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	19.9	0.8027
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	20.7	0.8080

Compare expression of checked genes

Lus10034857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.