Gene [FLAX] | FIBexDB

Lus10034858 [FLAX]

External link

JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value
Lus10018336 [exp]	78 / 4e-17	ND	/
Lus10020961 [exp]	69 / 3e-13	ND	/
Lus10003899 [exp]	56 / 2e-09	ND	/
Lus10015601 [exp]	48 / 1e-06	ND	/
Lus10011832 [exp]	41 / 8e-05	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10034858 pacid=23142260 polypeptide=Lus10034858 locus=Lus10034858.g ID=Lus10034858.BGIv1.0 annot-version=v1.0

ATGTTGAAAAGTTTGTATGGAGAGGTGTTAAGCCAAAGTTTTCCGGTCAAGCACAGCGTCGACATGGGAGCTCCTCAGGTGTGTTTTTACGTGACGGATG

TTAAGAATACTTCTTTGGGTTCTTATGACGCGACAGTTAAGAATTCTTCTTTCTCCCATGCTGGAAAGTGTGACGTGTGCCCGAGTAAGAAGACCATCTT

GGTGGGGGAAGATGGAGTTAAGGATCGACTAAAGCTTTTAGAACGTTATTTGGTTTTTCAAATGGTAAGCAAAATTCACGAGCATCTTGATTGGGTGGCT

TTCAGACGTTGGATGATCGTGAACTGGGGAGTCAAGGAGAGAGCTCATGTGAAGGATTTGGTTGACCATCTCTGGATGTTAGAATGCGAGGCGGAGACAC

ATGTGGAAAGGGAGAAGAGTAGAGCTCCGATGAGTAGAGGCACTCTCCGGCCTGGCTCTTCCCGAGTGTGGCAGCTTGTCCAGGGACAAGGATCTAGGAG

AAAGGATGGAGAGGCGAGAGCGGAAGAGGAGGCTTCCGGATCCTTCCTGGAGAATATAGAGAAGCATGGGGGATGTATTTTGGTCCCGTCCAATAAGGAA

GTGCAACGAGGGAGGAGAGCAATGGAGGGTCGGTGGTGGTGA

AA sequence

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>Lus10034858 pacid=23142260 polypeptide=Lus10034858 locus=Lus10034858.g ID=Lus10034858.BGIv1.0 annot-version=v1.0

MLKSLYGEVLSQSFPVKHSVDMGAPQVCFYVTDVKNTSLGSYDATVKNSSFSHAGKCDVCPSKKTILVGEDGVKDRLKLLERYLVFQMVSKIHEHLDWVA

FRRWMIVNWGVKERAHVKDLVDHLWMLECEAETHVEREKSRAPMSRGTLRPGSSRVWQLVQGQGSRRKDGEARAEEEASGSFLENIEKHGGCILVPSNKE

VQRGRRAMEGRWW

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034858 [exp]	0	1

Lus10034858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.