Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10710 526 / 0 RHS12 root hair specific 12 (.1) AT5G04960 518 / 3e-179 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 377 / 4e-124 ATPME1 pectin methylesterase 1 (.1) AT5G49180 350 / 6e-114 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14300 353 / 9e-111 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT3G05610 341 / 3e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 338 / 3e-109 ATPMEPCRA methylesterase PCR A (.1) AT5G27870 333 / 2e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 326 / 2e-104 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 323 / 1e-103 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033399 [exp] 986 / 0 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10003934 [exp] 388 / 2e-127 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10039927 [exp] 343 / 3e-110 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 341 / 3e-110 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037456 [exp] 332 / 1e-109 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10018335 [exp] 335 / 1e-107 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 329 / 5e-106 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 327 / 1e-104 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 325 / 4e-104 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247600 [exp] 615 / 0 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 606 / 0 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.003G072700 [exp] 409 / 2e-136 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 387 / 7e-128 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 378 / 6e-125 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.006G134700 [exp] 352 / 2e-114 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 350 / 2e-114 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 348 / 5e-113 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 344 / 9e-112 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.018G051200 [exp] 345 / 2e-111 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10034859 pacid=23142181 polypeptide=Lus10034859 locus=Lus10034859.g ID=Lus10034859.BGIv1.0 annot-version=v1.0 ATGGCCTCTAACCTCCTCCGACCATACGGCAAGATCGACGACTCAGAGCAAGCTCGCCTGGACGCGCATTGTAGATCTCGAAAGAGAATCGCTATCATCA TCATCTCTTCCCTCGTCCTCCTCACCATCGTCCTCGCTTCCATGCTTGGCACGCAAGCCACTAGCAAAAAGAACCACCGTCACGAGGATGACAGTACCAC CACGTCCATCAACAAGTCTCTCGCAGCCGTCTGCGGCGTGACACTCTACAAGGACTCCTGTTACGAAAGCATGTCATCCGCCGCCAAATCAGGTAACCTC CGCCCGGAAGATCTTTTCAATCTCTCCCTCCAAGTCGCCATTGGTGCAATACAAAGAGCGTCTGAATATTTCTCCCGAAATCACAATAATGCCACTGCAG TCTCCAACTGCATGGAGCTTCTAGCCCTAGCGTCTGACCACCTCAACGATACCTCCTCTTCTGCCAGTGCGTCCAGTAGTAATATTCTGGACGCAGTGGA TGACCTGAGGACGTGGTTGAGCTCAGCAGCCACGTACCAAGGCACATGCATCGAGGGCCTCCAAGAGGCCAACATGACGGAGGTCCTAGATGACGTGACC CAGGGGGTGTTGAGGAACTCTACCGAGCTGACAAGCAACAGCTTAGCGATAGTTACGTGGATAGAAAAGGTAGCGGCCGCAAGCTCGCTCGGCAGGGGCG GACAAAAGAGGAGGAGGTTGTTGGATTGGGTGCAAGTGGAACGGAGGGAGTACTTGGAAGTGTTAGAGACGGATGAGAAAACACTAAGGAGGAAGGCAGA TATAGTGGTGGCGAAAGATGGGAGCGGCAGGTATAAGACCATAGGAGAGGCGTTGAAGGCAGTACCGGAGAAGAGTAAGAAGAAGAGGGTTGTGATATAT GTGAAGAAGGGAGTTTATAAGGAGAATGTCAGGGTTGAGAAAAACTTGTGGAACGTTGTCATGGTTGGCGACGGTATGGACGCCACCGTCGTTACCGGCA GCCGAAATGTCGTTGACGGGACTCCGCAACACCCCCCCCTCCCCCCCCGCCACTTTTGGGACATGGGATTCGTAAACATGGCAGGTCCAACGAAGCACCA AGCCGTGGCCCTAATGTGCAACGGCGACATGTCCGTCTTCTACCGCTGCAGCTTCGACGCCTTTCAAGACACCCTCTACTCTCACGCCAACCGCCAGTTC TATCGTGAGTGCAACATCTCTGGCACTGTCGACTTCATCTTTGGAAACTCTGCCGTCGTCATCCAGAACTCCAACATCCTCCCCAAAGTCCCCATGCAGG GCCAGAAGAACACTATAACCGCACAGGGAAAGACCGACCCCAACCAGAACACTGGTATCGTCGTTCAAAATTGCAATATACTGCCTTACAAAGGAAACTG GAAAGGGGTGTCTGCGGTTAAGAACTTTTTAGGACGACCGTGGAAGGATTATTCCACGACTGTATACATGGGGTCGATGATTGGAAGTATCATCGACCCT ACGGGGTGGTTGCCGTGGATTGGAACGACTGCCCCGCCCACGATTTATTATTCGGAGTATGAGAACTATGGGCCAGGGGCTTCTACTAAGAATAGAGTGA AGTGGAAGGGGGTGAAGAGTATGGATAAGAAGCAAGCTGGGAAGTTTTGGGTGAAGGCATTTATTCAAGGGGATAAGTGGATCCAGGGTTCTGGTGCTGG AATTCTATTTAATTGA
AA sequence Show only first row Show all	>Lus10034859 pacid=23142181 polypeptide=Lus10034859 locus=Lus10034859.g ID=Lus10034859.BGIv1.0 annot-version=v1.0 MASNLLRPYGKIDDSEQARLDAHCRSRKRIAIIIISSLVLLTIVLASMLGTQATSKKNHRHEDDSTTTSINKSLAAVCGVTLYKDSCYESMSSAAKSGNL RPEDLFNLSLQVAIGAIQRASEYFSRNHNNATAVSNCMELLALASDHLNDTSSSASASSSNILDAVDDLRTWLSSAATYQGTCIEGLQEANMTEVLDDVT QGVLRNSTELTSNSLAIVTWIEKVAAASSLGRGGQKRRRLLDWVQVERREYLEVLETDEKTLRRKADIVVAKDGSGRYKTIGEALKAVPEKSKKKRVVIY VKKGVYKENVRVEKNLWNVVMVGDGMDATVVTGSRNVVDGTPQHPPLPPRHFWDMGFVNMAGPTKHQAVALMCNGDMSVFYRCSFDAFQDTLYSHANRQF YRECNISGTVDFIFGNSAVVIQNSNILPKVPMQGQKNTITAQGKTDPNQNTGIVVQNCNILPYKGNWKGVSAVKNFLGRPWKDYSTTVYMGSMIGSIIDP TGWLPWIGTTAPPTIYYSEYENYGPGASTKNRVKWKGVKSMDKKQAGKFWVKAFIQGDKWIQGSGAGILFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	0	1
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	4.6	0.7837
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	6.3	0.7637
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	8.3	0.7524
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Lus10033488 [exp]	8.7	0.6230
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10043232 [exp]	8.9	0.7368
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	11.0	0.7349
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	11.3	0.7408
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10031507 [exp]	11.8	0.7339
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10005539 [exp]	13.0	0.7289
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	13.3	0.6481

Compare expression of checked genes

Lus10034859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.