Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 254 / 6e-77 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G23580 243 / 2e-74 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G04870 245 / 8e-74 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G20410 243 / 2e-73 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 242 / 2e-73 CPK21 calcium-dependent protein kinase 21 (.1) AT4G23650 241 / 7e-73 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT5G19360 238 / 4e-72 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 238 / 5e-72 CPK17 calcium-dependent protein kinase 17 (.1) AT1G50700 237 / 1e-71 CPK33 calcium-dependent protein kinase 33 (.1) AT2G38910 238 / 2e-71 CPK20 calcium-dependent protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033400 [exp] 1029 / 0 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10008958 [exp] 256 / 5e-79 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 257 / 3e-78 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10017537 [exp] 253 / 3e-78 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10016200 [exp] 249 / 2e-75 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 248 / 3e-75 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10040071 [exp] 243 / 8e-74 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10021531 [exp] 243 / 1e-73 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10029358 [exp] 238 / 7e-73 AT5G04870 672 / 0.0 calcium dependent protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247400 [exp] 866 / 0 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.008G011541 [exp] 692 / 0 AT3G10660 201 / 7e-58 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.001G097400 [exp] 253 / 7e-78 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 252 / 3e-77 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.010G244800 [exp] 251 / 2e-76 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 250 / 5e-76 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 249 / 1e-75 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G200600 [exp] 246 / 3e-74 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G065700 [exp] 245 / 5e-74 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G066700 [exp] 245 / 1e-73 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10034860 pacid=23142177 polypeptide=Lus10034860 locus=Lus10034860.g ID=Lus10034860.BGIv1.0 annot-version=v1.0 ATGGGGAAGGAAACAAAGAGGCTAGTCGATGAATATGAAGTAGCAGAAGTCCTCGGGAAGGGAGGATTCTCTGTTGTCAGGAAAGGAATCAGGAGATACA ATTCTGCTCTAGACACAACAACAGCAGCAGACCAAGTTGCCATTAAAACCCTTAAGAGACTCCAAAACCCTGCAATTCCAGGCAGGGCTGGACCCACCCT CCCACCATGGAAGCATCAGGCCACCGTCTCCGACGCCTTGCTCACAAACGAGATCCTAGTCATGAGGAAAGTCGTTGAGAAAGTCTCCCCTCATCCGAAT GTTATTGACCTCTACGATGTCTATGAGGATCAGAATGGGGTCCACCTTGTCCTTGAGCTCTGCTCGGGAGGGGAACTCTTTGATCGGATTGTTGGGAGGA AAGACAGGTACTCGGAGAGGGAGGCGGCGGCGGTCGTCAGGCAGATAGCGAAAGGTTTGGAGGCCCTTCATGGAGCTAATATTGTGCACAGGGACTTGAA ACCTGAGAATTGTTTGTTCTTGAATGAGAGAGATGACTCTGCTCTTAAGATTATGGATTTTGGGTTGAGTTCTGTGGAGGAATTCACTGATCCTGTTGTT GGGTTGTTTGGATCTATTGATTATGTGTCCCCTGAGGCGTTGTCACGAGGGAGAGTCTCTTCCAAGAGTGATATGTGGTCTCTCGGTGTCATCCTCTACA TTTTGCTGTCAGGGTACCCTCCTTTCATTGCACAGTCAAACAGGCAGAAGCAGAAGATGATACTTGCTGGTGATTTCAGTTTCGACGAGCGGAGTTGGAA GCAAATTACATCGTCTGCCAAGCAATTGATCACTGACCTTCTGCAAGTTGATCCTCACAGAAGACCAAGTGCTTTCGATGTTCTGAATCATCCATGGGTG ACAGGCGACTCGGCAAAAGAGGAGCGAATGGACCCAGAGGTCGTTACCAGGCTGCAGAGGTTCAATGCTCGACGCAAGCTCCGTGCAGCGGCCATTGCTA GTGTGTGGAGCAGCACAATCTTCCTGAGAACCAAGAAGCTCAGATCTTTGCTGGGATCTCATGATCTCAACGAGAAAGAGCTCGAGAACCTCAGAGTGCA CTTCAAGAATCTATGTGCCAAGGGTGACAATGCAACTCTGCCAGAGTTCGAGGAAGTGCTAAAGGCAATGAAAATGTCTACATTAGTCCCTCTGGCCCCT CGAATCTTCGACCTTTTCGACAACAATCGCGATAGAACAGTCGACATGAGGGAGATACTATGTGGATTCTCAAGCCTCAGGAACTCCAGCGGAGATGATG CTCTCCGTTTATGCTTCCAGATGTATGATATAGACAGGTCAGGATGCATTACAAAGGAAGAAGTAGCCTCCATGCTTCGCGCCTTGCCAGTGGAATGTCT GCCGACGGATGTGACGGAACCAGGGAAGTTGGACGAGATATTTGACAGGATGGATGCAAACAGTGATGGGAAAGTGAGTTTTGAGGAGTTTAAAGCTGCT ATGCAGATTGACAGCTCTCTCCAGGATGCTGTCCTCTCATCTCTGCGTCAACAATAA
AA sequence Show only first row Show all	>Lus10034860 pacid=23142177 polypeptide=Lus10034860 locus=Lus10034860.g ID=Lus10034860.BGIv1.0 annot-version=v1.0 MGKETKRLVDEYEVAEVLGKGGFSVVRKGIRRYNSALDTTTAADQVAIKTLKRLQNPAIPGRAGPTLPPWKHQATVSDALLTNEILVMRKVVEKVSPHPN VIDLYDVYEDQNGVHLVLELCSGGELFDRIVGRKDRYSEREAAAVVRQIAKGLEALHGANIVHRDLKPENCLFLNERDDSALKIMDFGLSSVEEFTDPVV GLFGSIDYVSPEALSRGRVSSKSDMWSLGVILYILLSGYPPFIAQSNRQKQKMILAGDFSFDERSWKQITSSAKQLITDLLQVDPHRRPSAFDVLNHPWV TGDSAKEERMDPEVVTRLQRFNARRKLRAAAIASVWSSTIFLRTKKLRSLLGSHDLNEKELENLRVHFKNLCAKGDNATLPEFEEVLKAMKMSTLVPLAP RIFDLFDNNRDRTVDMREILCGFSSLRNSSGDDALRLCFQMYDIDRSGCITKEEVASMLRALPVECLPTDVTEPGKLDEIFDRMDANSDGKVSFEEFKAA MQIDSSLQDAVLSSLRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10034860 [exp]	0	1
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	34.2	0.7765
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	38.2	0.7636
					Lus10008695 [exp]	42.5	0.7520
					Lus10008694 [exp]	53.5	0.7522
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008910 [exp]	113.6	0.7199
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	114.6	0.7330
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10028320 [exp]	205.5	0.6849
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	207.1	0.6955
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	245.0	0.6785

Compare expression of checked genes

Lus10034860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.