Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50350 56 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033401 [exp] 806 / 0 AT5G50350 57 / 3e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247100 [exp] 430 / 3e-144 AT5G50350 55 / 1e-07 unknown protein Potri.008G012000 [exp] 415 / 1e-138 AT5G50350 54 / 3e-07 unknown protein Potri.012G094200 [exp] 99 / 2e-21 AT5G50350 234 / 3e-69 unknown protein Potri.015G091500 [exp] 96 / 1e-20 AT5G50350 229 / 1e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034861 pacid=23142215 polypeptide=Lus10034861 locus=Lus10034861.g ID=Lus10034861.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCTGCTTTCAAATCCACTTCCAGGAGAGGACCCGCTCGTCCCTCTACCTCCTCCTCTTCTAATTCTTCTTCTTCTGCTTCAAAGAATTCAT CTTTATCCGATAAGGAATCCAACTCTACCACAGGCAATTCCAAATCGGCGCCGCCGCATGCTCTCCGCCGATCAAGAAGTGTAAGCGCCGCCGCAAGAAA CCCACGCCCGGACACGTCCTCCTCCTATTCTTCTACCTCTACCGCTTCAGATTTCTTGATTACCAGAGAGAACCCACTCTACTCGTTCAATTCCTCATCC CCTCCCGACAGGGATATAACCAAAGCTCAGGACTTTCCAATTCTAGGTTCCAAGTTAAAGGAGGAGTCAATTTCCAAGCTATCAAAGCCAAACGGTGCTT CTGATTCTGATATCAGGAGGGGAAGATCTATGTCCAGAACGGCAGACGCTGTCAAGCCTTCGGCAGGTCCTGCCAATGGGAAGCCGAACCTGAGAGAGAG AAGCCTATCCAGGGTGGATACCAGCCACCGCCGATCTCGCTCTGTGTCCCGGGCCCCTATTTCCAGGACCTATTCCTCTGTGGATTCTGAGAGTGATGTT GAAGTTAGAAGAAGCTTGCCTACAATGCATAGAAATGGGAATTCTGCTAGTGGAGTGAAGGGTGTGGGGAGAAGCAGTGTTCAATCCGATGGTTCAGCTT CAACTTTGCCTTCTTCTCCGACTTATAGTTGGGAAGATGCAGGTTTAGGAGACGCGTTTACGGACGCTGAAGAGAAAACTATCAAAGCTGTATTTGAGCA AATGAAGGCATCCCAAGTAGATAACTTGGGATCTGATACCTCTGATCGTATATATGAAACTGTCCGATCTGAAGTCAGACGGGCTATTGCCGATATCCAA GGTGACCTTGAAACTGCCATTCAAAGAAGTGCTATTGGTAGTGCTGATATAACTGATATTCCTCCCGACCTAGTCAATCCAAGTGCAGTTGAATTAGTTC TGGACATCAGGAGAGAATACGCCACCAAGCTAGAACAGTCCCATGAAAGGGCTATGAAACTTCGGGCAGATCTAGCTGTTGAAGAACACCGTGGTCTGGA GCTGAGCAGAATCTTGAAGGAAGTGCTCCCAGACCCTAAGGCCTCTAATGGACGCAAGCCTCGAGTCGGAAGAAAATCTAGCATGGAGAGAAGGAAGATG TCAAAACGGTTAACGGAAGAAGCCATGGCTTACTTTGACGAATGTGTCTCACTATCAACTTTCGACAGCTCTGACTTTTCGTCTCAAGAAGAGCCATCGT TGAGATTTGTTGGCACTCATGTTGCTGATCATTCTTCCTTTTCCCCAGCAACTCCTAGCATGACAGCGGATAGTGAACCGAAAAATGTTCTTAATAATAA GGAACCAGAAAGTATGTGGAGGGGCAGAGCATCAGGGCTATCAGTCGGCAGCAGCAAGGTGGAGGAGCCTACAGCAGGCGAAGTTAGCATAAGCAGCGCC AATACAAACTCAGCTCGAAGCTTTCAGTTTTCCTTCAGACGCAATTCAAATGACAGTTTAGAAATTCAGCAAGACATTGAAAAATACACCAAAGGGTTGG GAAAAGGCATAGAAAGATTCGACATAGGCAGTCAGAGTTGTAATGATTATGATGTGGAGGAGTACGAGCTGCAGTCATTGCAGCAAAGCATGGTGTTTGA CAGGGTGTTGTTCAGGACCAGAATCGAGTCAGGTAGCATGCTGTTATGCAGCAGTGGAGGGTTTGGAATCTGGACTTAA
AA sequence Show only first row Show all	>Lus10034861 pacid=23142215 polypeptide=Lus10034861 locus=Lus10034861.g ID=Lus10034861.BGIv1.0 annot-version=v1.0 MAVSAFKSTSRRGPARPSTSSSSNSSSSASKNSSLSDKESNSTTGNSKSAPPHALRRSRSVSAAARNPRPDTSSSYSSTSTASDFLITRENPLYSFNSSS PPDRDITKAQDFPILGSKLKEESISKLSKPNGASDSDIRRGRSMSRTADAVKPSAGPANGKPNLRERSLSRVDTSHRRSRSVSRAPISRTYSSVDSESDV EVRRSLPTMHRNGNSASGVKGVGRSSVQSDGSASTLPSSPTYSWEDAGLGDAFTDAEEKTIKAVFEQMKASQVDNLGSDTSDRIYETVRSEVRRAIADIQ GDLETAIQRSAIGSADITDIPPDLVNPSAVELVLDIRREYATKLEQSHERAMKLRADLAVEEHRGLELSRILKEVLPDPKASNGRKPRVGRKSSMERRKM SKRLTEEAMAYFDECVSLSTFDSSDFSSQEEPSLRFVGTHVADHSSFSPATPSMTADSEPKNVLNNKEPESMWRGRASGLSVGSSKVEEPTAGEVSISSA NTNSARSFQFSFRRNSNDSLEIQQDIEKYTKGLGKGIERFDIGSQSCNDYDVEEYELQSLQQSMVFDRVLFRTRIESGSMLLCSSGGFGIWT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50350			unknown protein		Lus10034861 [exp]	0	1
					Lus10013098 [exp]	3.5	0.7064
					Lus10024688 [exp]	7.9	0.6349
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	10.7	0.7179
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	14.1	0.6544
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	42.3	0.6589
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	48.2	0.5636
AT3G45330			Concanavalin A-like lectin pro...		Lus10003574 [exp]	50.3	0.5788
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	50.8	0.6528
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	51.8	0.6170
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	56.7	0.5989

Compare expression of checked genes

Lus10034861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.