Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18440 188 / 4e-53 AtNUFIP nuclear FMRP-interacting protein, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033402 [exp] 352 / 8e-116 AT5G18440 144 / 8e-38 nuclear FMRP-interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246500 [exp] 195 / 2e-54 AT5G18440 202 / 1e-57 nuclear FMRP-interacting protein, unknown protein Potri.008G012250 [exp] 160 / 3e-43 AT5G18440 169 / 2e-47 nuclear FMRP-interacting protein, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10453 [flax] [poplar] NUFIP1 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
Representative CDS sequence Show only first row Show all	>Lus10034863 pacid=23142285 polypeptide=Lus10034863 locus=Lus10034863.g ID=Lus10034863.BGIv1.0 annot-version=v1.0 ATGAGGGGACGACCTAATCATTCTTTCCGTCCTCGGCCTCCGCTTCCCACTCAACCTCAGTCCAATGTTAATCCTGCCGCACCGGGGAATTCACAATCAC AGGGTTTTCGTGGCAACCCTCCACAAGGAAATCCACCAAACGTGTTTCAGAACGCAGCTCCGGTGCAACCTTCTCAGATGCGTGGAGTAAATCCTCAAAC TTTGAACAATGGGCAGTTCATACCTAATAATAATATCCCTCCGCCAATGATGATGATGCAACAGCCAGGTCCCTTCAATGCTCCTATGATGATGCCTCCA CAGCTCAATCCAGGATTTGTTGCTAATCCAATGTTCATGAATCAGCAAATGAATTTTCAACAACAAGGGCAGTTGGTTCTACAGCTTGCTAGCTTGGTTC AGCAACTCAGTCAGAATGGTGGTCTCTTCAACATGCCGCCCAATCCAATGCAGAATATGAATCCTTCTATGTTGCCTTTACAAATGCCTAATCTTAATCA AGTTCCGAATCCAAACATTTTCCCAAATCAGATGTTTGGTGCTGGGCAGCAGCCTATTCCCAATCAGCAGAACTTTATGATGCAACAACAACAACCAATG GGTGCAAATTTGTCTAATAGCTCGCCTGCTACTACACTGTCTGGACCGGGGAACCCTTCTGCAAATCAGCAGAGTTTCCAGCCGCAGTCTTCTTCCTTCC CTGGACAGCAGGGCGACAATTTTGTTGGAATGCCTCCGAACAGCAATAGAAATTCTCAGTGGGGAAACTCTACAAGGAAGGACTTCCACCACCAATCTAT CAAAGAGGGCTCGCAGCCAGGATATAATAATTCTCAGCTCCATCCAAATGATTACAAGAAGAGGAAATTCGAGTCAAAAGGGCGTGGTCATCAGAGGCCA TCAAAAATTGGTGGCAGTAATCCTGCAACTCCAATTCAAGCTGGGGAGAAGAAAAGGGTGTTGATCCCGAACTATCCAGAACATGAAGTCAAACAGTGGC GTGAACTACGTAAGAAGAATTACCCGACGAAAGGCAATGTAGATAAGAAGCAAGCTCTAAAAGTAGCAGACGCTGAGGCCATCGAGAAAGAAGCCAAAAT GCGCCGAGAGCAACTGAAGGAAGTTCTGGCAAAGCAGGCTGAATTGGGAGTAGAAGTAGCAGAAGTTCCATCGTATTACTTGTTGGATTCAGAAAAGCAA GTTAATGATCAAGAGGGAGACGGTAAATGGCAGAAAAAGAAAGGAAGGTTCCAACAGAAAAGGGAAAGACGCAACAAAAGAGGCCAGAATTTCGGTAACC AAGCGACAGCAAGCCATGAACCGTCAGGCATTGCGGCCCCTAAAGTGAAAGAGCCTACACTTCTGCAAAAGCTGCTGTGTGCAGACATAAAGAAAGACAA CCAAAGATTGTTACAGTCGTTACGGTTCATGGCAATGAACTCTTTCTTCGAGGATCTTCCGGGGAAGCCTTTGAGTTTTCCCAAGGTAGTCGTTCAAGAA GACGGTATCGAGACTACAATATTCGAAGATGTGAAGCCTGGAGAAGTAGAGGATGAGACAGGGACTGATATATTTCAGGGTGGTGATGAGGAAGAGCATG ATGATAATGATGAAGATGTGCAACAGATGAAAGCAGGGGCTAGTTTATCTGAGGGGAAAAGGAATATCGTTGAGGAGATTGTGGTGACGGAAGAGGAAGA AGGAGAGATCATTAACTGA
AA sequence Show only first row Show all	>Lus10034863 pacid=23142285 polypeptide=Lus10034863 locus=Lus10034863.g ID=Lus10034863.BGIv1.0 annot-version=v1.0 MRGRPNHSFRPRPPLPTQPQSNVNPAAPGNSQSQGFRGNPPQGNPPNVFQNAAPVQPSQMRGVNPQTLNNGQFIPNNNIPPPMMMMQQPGPFNAPMMMPP QLNPGFVANPMFMNQQMNFQQQGQLVLQLASLVQQLSQNGGLFNMPPNPMQNMNPSMLPLQMPNLNQVPNPNIFPNQMFGAGQQPIPNQQNFMMQQQQPM GANLSNSSPATTLSGPGNPSANQQSFQPQSSSFPGQQGDNFVGMPPNSNRNSQWGNSTRKDFHHQSIKEGSQPGYNNSQLHPNDYKKRKFESKGRGHQRP SKIGGSNPATPIQAGEKKRVLIPNYPEHEVKQWRELRKKNYPTKGNVDKKQALKVADAEAIEKEAKMRREQLKEVLAKQAELGVEVAEVPSYYLLDSEKQ VNDQEGDGKWQKKKGRFQQKRERRNKRGQNFGNQATASHEPSGIAAPKVKEPTLLQKLLCADIKKDNQRLLQSLRFMAMNSFFEDLPGKPLSFPKVVVQE DGIETTIFEDVKPGEVEDETGTDIFQGGDEEEHDDNDEDVQQMKAGASLSEGKRNIVEEIVVTEEEEGEIIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	0	1
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	2.0	0.7194
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	3.9	0.6826
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	7.6	0.7127
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	7.9	0.7101
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	9.9	0.6742
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	13.3	0.6538
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	16.4	0.6553
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	18.3	0.6367
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	19.3	0.6307
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	20.0	0.6772

Compare expression of checked genes

Lus10034863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.