Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1644 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT1G26130 687 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G13900 678 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 678 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G25610 673 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 672 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 671 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 669 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 666 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 657 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033406 [exp] 2258 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1932 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1930 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 1885 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1874 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10013286 [exp] 678 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10006881 [exp] 675 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 674 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 672 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1806 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1798 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1747 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1293 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 890 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.003G043300 [exp] 671 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 664 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 664 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 660 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.012G058000 [exp] 658 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10034872 pacid=23142256 polypeptide=Lus10034872 locus=Lus10034872.g ID=Lus10034872.BGIv1.0 annot-version=v1.0 ATGGATTCATCTTCTTCGATCCAGTTTGACAGTTCCTTAAGCAATGAAATCACTTTGGGTTCAAACTCCAGGAGAAGCGCTTCTTCCCACCATTCCCGTA ATTCCAGAGCCGGTTCAACGAGGGAAGTTGCTTTCATTGATGTAGGAGGAGGAGGAGGAGCTACTAAGCCTATCATGTATGGTGGATCCAGGAGGGCGGA TTCGGAAGTATACAGTATGTCCCAAAAGGAGATCAACGAAGAAGATGCTAGGTTTGTTTACATTGACGATCCTGGAAGGACCAATGAGAATTTTGAGTTT GCTAGCAACTCCATTAGGACTGCTAAATACTCTGCGATTTCCTTCTTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCATACATTTACTTCCTAA TTATAGCCATCCTCAATCAGTTGCCTCAGCTAGCTGTTTTCGGCCGAGGAGCTTCCATTTTGCCACTTGCCTTTGTTCTCCTTGTTACTGCTATTAAGGA TGCCTATGAGGATTGGAGAAGGCATAGGGCTGATAAGATTGAGAACAATAGGTTGGCTTGGGTCTTACTTGATGGTCGCTTCCAACAAAAGAGATTTAAG GATATTCAGGTTGGTGAAGTCATTAAGGTGGAAGCAAACGGTACTCTTCCTTGTGATATGGTCTTGCTCTCTACCAGTGACCCTACTGGGGTTGCTTATG TGCAGACTATTAACTTGGATGGCGAATCGAATTTGAAGACTCGGTATGCTAAGCAGGAGACACTTTTGAAGAATCCTGAGAATTTGGTCATGTTTAATGG GCTGATCAAGTGTGAGAAGCCTAATAGGAACATATATGGGTTCCATGGAAACATGGAGATTGATGGGAAACGCCTCTCACTTGGACCTTCGAATATTATT CTTCGAGGCTGTGATCTTAAGAATACTGCTTGGGTTCTTGGGGTTGCAGTGTATTGTGGACCTGAGACCAAAGCTATGTTGAATAACTCAGGAGCCCCTT CCAAGAGAAGCCGGCTTGAGACACGAATGAACTTTGAGATCATCATGCTCTCTGTGTTTCTTGTTGCCTTGTGTACCGTTGTATCAGTATGTGCTGCTGT ATGGTTGAGACGCCACAATGATGAGTTAGATACTACACCCTTTTATAGGCGAAAAGATTACAGTGAAGCCGAGCCTGATAACTATAACTACTATGGATGG GGAATGGAAATATTGTTCACATTTCTGATGGCAGTAATTGTGTTCCAAATCATGATTCCTATTTCTTTGTACATCTCAATGGAGCTTGTTCGGGTTGGTC AGGCTTATTTCATGATTCGAGATACGTACATGTATGACGAGGCATCAAATACAAGGTTTCAGTGTCGGGCTTTGAATATAAACGAAGATTTAGGGCAGAT AAAGTATGTGTTCTCCGATAAAACTGGGACACTTACAGAGAACAAGATGGAATTCCAATGTGCAAGCATATGGGGTGTAGACTACAGTGGTGAGAAGGCC ATCTCTGCAGATGAGCAAGGAGGATACTCTGTTAAAGTGGATGGGGCGACTGTGAGTCCAAAGATGAAGGTGAAGGTTGATCCTCAGCTTCTGCAAGTGT TAAGAAGTCGAAACAGGACCAATGAATTTAAACACATCCGTGATTTCTTCCTTGCATTAGCAGCTTGTAATACAATTGTGCCTCTCATAGTTGATACATC TGATCCTGTTTCCAAGTTGATTGATTATCAAGGGGAATCTCCCGATGAGCAAGCATTGGCTTATGCTGCTGCTGCATATGGATTTATGCTTATAGAGCGA ACTTCCGGCCACATAGTTATTGATGTTCTTGGTGAAAGGCAAAGGTTCAACGTCTTAGGTTTGCATGAGTTTGACAGTGACAGGAAGAGGATGTCTGTGA TATTAGGATTTCCTGACAAGTCGGTCAAAATCTTCGTAAAGGGTGCTGATACGTCCATGTTCACTGCCATTGATCGATCTTCAAGCATGGGCATAGTACG TGCGACTGAAGGCCATCTTCATTCTTACTCCTCCATTGGGCTCAGAACATTGGTTATTGGGATGCGTGAATTGAGTGATTCGGAATTCGAGAATTGGCAT TCTTCTTTTGAAGCTGCTAGTACCGCTTTGATGGGCAGGGCTGCTTTGCTTCGGAAGGTTGCCGGTAATGTTGAAAACCATCTTACCTTACTTGGTGCCT CCGCTATTGAAGATAAACTTCAACAGGGTGTCCCTGAAGCCATCGAGTCACTGAGGATAGCAGGAATTAAAGTATGGGTTTTAACTGGGGATAAACAAGA AACTGCCATATCAATTGGCTATTCCTCAAAGCTCCTAACTAACAAAATGACACAGATCATTATAAACAGCAACTCCAAAGAATCATGTCGAAAGAGTTTG CAAGATGCTTTGCTTGTGTGTAAGAAGCTTAGCAATGAGTCCACCAGGACACCTAACGATGAAGAAGCTTCTGCATCTTCTGAAACCTTAGTTGCTTTGA TCATTGATGGGACCAGCCTTGTCTATATCCTTGATAGCGAACTTGAAGAAGAGCTCTTTGAATTATCAAGCAAATGTTCCGTGGTCCTTTGTTGTCGTGT GGCACCGCTTCAGAAAGCTGGAATTGTCGCCCTTGTGAAGACCAGGACTTCTGACATGACACTATCTATTGGTGATGGTGCAAATGATGTTTCAATGATC CAAATGGCTGATGTTGGAGTGGGAATCAGTGGGCAAGAGGGGCGGCAAGCTGTTATGTCATCTGATTTTGCCATGGGTCAATTCAGGTTCTTAGTTCCTC TTCTGCTGGTCCATGGACACTGGAATTACCAAAGAATGGGATACATGATAATTTACAACTTCTACAGGAATGCTGTGTTTGTTCTTGTCTTGTTTTGGTA TGTGCTCTTTACCGCTTTCACTTTGACAACTGCCATTAACGAATGGAACAGTGTGTTATATTCTGTAATCTACACAGCACTGCCTACTGTTATAGTCGGT GTTCTTGACAAGGACTTAAGCAGGAAGACTTTGCTTAAATATCCTCAGCTTTACGGAGCAGGGCACAGACGAGAAGGTTATAATTCAAAGCTGTTCTGGC TGACGATAATGGACACTTTGTGGCAAAGTGTGGTTGTCTTCTTTGGCCCTTTCTTTGTCTACCAGAATAGTGAAATCGACGCAGCAAGTATAGGGGACCT GTGGACTCTAGCAGTTGTTATTTTGGTTAATTTGCACCTGGCAATGGACATCACACGGTGGAATTGGCTTATGCATGCAGCCATATGGGGATCCATTGTT GCCACTTTCATCACTGTAATGATCATTGATGCCATACCAAGTTTAGTTGGTTACTGGGCCTTTTTTCATATCGCGAAAGCCGGATCGTTCTGGCTTTGCT TACTTGGCATAATTGTAGCTTCACTAGTTCCACGGTTCGTTGTAAAAGTACTGTATCAATACTGCACACCTAGTGACATCCAAATAGCCAAGGAGGCGGA GAAGTTCAAACCTTTAAGAAGGGATTTTGGATCTACAGAAGTAGAAATGAGTGCCATTTTGGGCTCTCCAAGATGA
AA sequence Show only first row Show all	>Lus10034872 pacid=23142256 polypeptide=Lus10034872 locus=Lus10034872.g ID=Lus10034872.BGIv1.0 annot-version=v1.0 MDSSSSIQFDSSLSNEITLGSNSRRSASSHHSRNSRAGSTREVAFIDVGGGGGATKPIMYGGSRRADSEVYSMSQKEINEEDARFVYIDDPGRTNENFEF ASNSIRTAKYSAISFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGASILPLAFVLLVTAIKDAYEDWRRHRADKIENNRLAWVLLDGRFQQKRFK DIQVGEVIKVEANGTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLLKNPENLVMFNGLIKCEKPNRNIYGFHGNMEIDGKRLSLGPSNII LRGCDLKNTAWVLGVAVYCGPETKAMLNNSGAPSKRSRLETRMNFEIIMLSVFLVALCTVVSVCAAVWLRRHNDELDTTPFYRRKDYSEAEPDNYNYYGW GMEILFTFLMAVIVFQIMIPISLYISMELVRVGQAYFMIRDTYMYDEASNTRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSGEKA ISADEQGGYSVKVDGATVSPKMKVKVDPQLLQVLRSRNRTNEFKHIRDFFLALAACNTIVPLIVDTSDPVSKLIDYQGESPDEQALAYAAAAYGFMLIER TSGHIVIDVLGERQRFNVLGLHEFDSDRKRMSVILGFPDKSVKIFVKGADTSMFTAIDRSSSMGIVRATEGHLHSYSSIGLRTLVIGMRELSDSEFENWH SSFEAASTALMGRAALLRKVAGNVENHLTLLGASAIEDKLQQGVPEAIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSL QDALLVCKKLSNESTRTPNDEEASASSETLVALIIDGTSLVYILDSELEEELFELSSKCSVVLCCRVAPLQKAGIVALVKTRTSDMTLSIGDGANDVSMI QMADVGVGISGQEGRQAVMSSDFAMGQFRFLVPLLLVHGHWNYQRMGYMIIYNFYRNAVFVLVLFWYVLFTAFTLTTAINEWNSVLYSVIYTALPTVIVG VLDKDLSRKTLLKYPQLYGAGHRREGYNSKLFWLTIMDTLWQSVVVFFGPFFVYQNSEIDAASIGDLWTLAVVILVNLHLAMDITRWNWLMHAAIWGSIV ATFITVMIIDAIPSLVGYWAFFHIAKAGSFWLCLLGIIVASLVPRFVVKVLYQYCTPSDIQIAKEAEKFKPLRRDFGSTEVEMSAILGSPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	0	1
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	6.0	0.8352
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	6.9	0.7872
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	7.5	0.8025
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	14.1	0.7446
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	15.6	0.7988
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10013158 [exp]	17.3	0.7594
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	17.9	0.7837
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	21.0	0.7694
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	28.6	0.7861
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	30.7	0.8183

Compare expression of checked genes

Lus10034872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.