Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 586 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 367 / 3e-115 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 328 / 3e-101 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 294 / 4e-88 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 279 / 3e-83 Leucine-rich repeat protein kinase family protein (.1) AT5G28680 194 / 6e-52 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 191 / 1e-50 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT4G39110 191 / 2e-50 Malectin/receptor-like protein kinase family protein (.1) AT5G07280 191 / 2e-50 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G24010 185 / 8e-49 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033407 [exp] 1348 / 0 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 550 / 0 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 526 / 9e-177 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 410 / 6e-132 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 408 / 8e-131 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 402 / 1e-128 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 367 / 3e-115 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 320 / 3e-98 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 313 / 1e-95 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014300 [exp] 758 / 0 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G039000 [exp] 649 / 0 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 625 / 0 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G333300 [exp] 418 / 5e-135 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G147700 [exp] 373 / 5e-118 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 370 / 2e-116 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 369 / 4e-116 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G164700 [exp] 192 / 3e-51 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.009G120400 [exp] 189 / 4e-50 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.015G061700 [exp] 186 / 5e-49 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034873 pacid=23142162 polypeptide=Lus10034873 locus=Lus10034873.g ID=Lus10034873.BGIv1.0 annot-version=v1.0 ATGGGTGGTGCACTTGTTAAACCATTCCGATATGCCATCTTGTTGTTACTAATGTTTTCTTCTCTATCTCATCCATCACTCCAGCAGCAGCAGCAGCTTA CAATCCAACAGTTTCTCATCTACCCTGAGACCCTAACCACCGGTGATGTCTGCACCAACAACAATGACTCTACTACCCTTGAGTGCTATCAAGGCAATAT AACTCAGCTCCACTTCATTGGCACCATTGATGATGGTTCCCCTTCTCCATTCTTGCTCCCTCAAGATTTCTCTACTTCCTCCTTCTTTGACTCTCTTGCT GCCATCCCAACCTTGAAGGTCTTGTCTATGGTCTCTCTTGGCCTTTGGGGTCCTCTACCTCCAACTATTGGCCAACTCTCTTCACTTGAGATTCTCAACC TCAGCTCCAACTCTCTCTCTGGTGTGCTCCCGATGGAGTTCTCATCTCTTACGAATCTCCAGACACTCATTCTTGACCACAACCAATTCACTGGTGTGGT TCCTCACTGGCTCACTTCACTCTCTGCTCTTGCTGTTTTGAGTCTCAAGAACAACTCTTTTGAAGGTTTCCTTCCCAACGCTATTTCAATGCTGGAGAAC GTTAGGATTCTTTCTGTGGCTAACAATCACTTGTCTGGAGAAGTTCCTGATCTTCATAATCTGACAAACCTTCAAGTTTTGGACTTGGGAAACAACCACC TTGGACCTCAGTTCCCCAACATTTCCAACAGGTTGGTGAGCCTTGTCTTGAGAAACAACAGCTTTAAGTTTGGGATTCCTTCTGAAAAGTTAGCTTCAGC CCGCCAGCTTCAGAAGCTGGACATTTCCTTTAATGGGTTTGAAGGACCAATTTCAGCACCATTGTTGCTGTCACTGCCTTCAATCAGTTACCTGGATGTC TCCAGGAACAAATTCACAGGGATGCTCACTGAGAATATGTCATGCAATGGACAACTTAGTTATGTGGACCTGTCGTCCAACCGTTTGAGTGGAGAAATCC CCACTTGTTTGGAATCTACCAGGGTTGTACTGTATGCAAACAACTGCTTGTCAACCAAAAACCAGAACCAAAATCCTTCATATACTTGCCACACTGAAGC TCTTGCAGTGAGAGTCTTCCCCAGGGATGATGAGGTGAAGCATACCAAAGTTAATAGCAAGGTGGTAGTTGTTGCATCAGGCGCCATGGGAGGAACTGTT GGAGGGATTGCGCTTATCGGCCTGGCCTTCCTGTTTGTGAGGAAAGCTTATCATAAGAATGCTGAAAAATCAACTCCAACAAGGCTCATCACGGAGAATG TATCAAGAATAAACACAGTAAAGCTTCTTTCTGATGCAAGGTACATATCAGAAACAATGAAGCTGGGAGCAGGTCTTCCCGCCTATCGAACCTTTGCTTT GGAGGAGCTTAAGGAAGCTACCAACAATTTTAATGCCTCAAATTTACTAAGTGAAGACACACACAACCAGGTCTACAGAGGAAAGCACACTGATGGAACA AACATAGCTATCAAGAGCTTAACACTGAGGAAAAAACAAAATCAGCAGACGTTTACACACCAGATTGAGTTGGCCTCGAAGCTTAGACACAGCGATTTGG TTAGTGTTCTTGGTCACTGCTCGGACTGCTGCCTGGAAGATTCGTCAAACATTAGCAAGATGTTTCTTATATTTGAGTTTTTTCCTAACGGGACACTAAG AGACCACATCTCAGGGTCTTCAGCGAAGAAGCTGAATTGGATGCAACGGATAGGGGCAGCCATTGGAGTTGCTAAAGGAATTCAATTCCTGCACACCGGA ATCGTTCCTGGAATGTTTTCAATCAATCTAAGGATTACAGATGTTCTGGTGGACCATGATTATCATGTCAAGATCAGTAGCTTCAACCTGCCTCCTTTTG ATGGGAAGAAAGTAAGCTTGGGCACTGCAGCTTTTCCTCCAGGACAAAAGCAGAGTTTCCAGGCCAGGCAGCAGCCTGAAGATGATAAAGATGTGGAAGA CCTTGGAGTAATCTTGCTTGAAATAATAGTTGGAAGACCAATCTTGTACAGGAATGAAGTCACAGTCTTAAAAGACCTGGTAAGAGCAGCTGCTGATGAC GCATCTCGAAGGAGTATAGTCGATCCAAATGTTCAGAAGGAATGTTCAAATGAGTCGCTGAAAACAATGGTAGATACATGCACAAGATGTCTCACCGATG ATCCATCGATGAGGCCATCCATTGGAGATGTGCTCTGGAACTTGCAGTTTGCAGCACAAGTTCAGGAATCATGGAAGGGTGACCAGATTCAAGAAGATTC AACTGCTTCTACATCTTCCCAAATTTAA
AA sequence Show only first row Show all	>Lus10034873 pacid=23142162 polypeptide=Lus10034873 locus=Lus10034873.g ID=Lus10034873.BGIv1.0 annot-version=v1.0 MGGALVKPFRYAILLLLMFSSLSHPSLQQQQQLTIQQFLIYPETLTTGDVCTNNNDSTTLECYQGNITQLHFIGTIDDGSPSPFLLPQDFSTSSFFDSLA AIPTLKVLSMVSLGLWGPLPPTIGQLSSLEILNLSSNSLSGVLPMEFSSLTNLQTLILDHNQFTGVVPHWLTSLSALAVLSLKNNSFEGFLPNAISMLEN VRILSVANNHLSGEVPDLHNLTNLQVLDLGNNHLGPQFPNISNRLVSLVLRNNSFKFGIPSEKLASARQLQKLDISFNGFEGPISAPLLLSLPSISYLDV SRNKFTGMLTENMSCNGQLSYVDLSSNRLSGEIPTCLESTRVVLYANNCLSTKNQNQNPSYTCHTEALAVRVFPRDDEVKHTKVNSKVVVVASGAMGGTV GGIALIGLAFLFVRKAYHKNAEKSTPTRLITENVSRINTVKLLSDARYISETMKLGAGLPAYRTFALEELKEATNNFNASNLLSEDTHNQVYRGKHTDGT NIAIKSLTLRKKQNQQTFTHQIELASKLRHSDLVSVLGHCSDCCLEDSSNISKMFLIFEFFPNGTLRDHISGSSAKKLNWMQRIGAAIGVAKGIQFLHTG IVPGMFSINLRITDVLVDHDYHVKISSFNLPPFDGKKVSLGTAAFPPGQKQSFQARQQPEDDKDVEDLGVILLEIIVGRPILYRNEVTVLKDLVRAAADD ASRRSIVDPNVQKECSNESLKTMVDTCTRCLTDDPSMRPSIGDVLWNLQFAAQVQESWKGDQIQEDSTASTSSQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	0	1
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	1.4	0.8804
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	2.0	0.9113
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10003021 [exp]	3.5	0.8624
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	4.6	0.8758
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	6.3	0.8533
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10000884 [exp]	11.7	0.8115
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	12.4	0.8389
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	12.8	0.8116
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	17.4	0.8446
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	18.0	0.8226

Compare expression of checked genes

Lus10034873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.