Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033409 [exp] 381 / 2e-133 AT3G10680 52 / 2e-07 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 42 / 0.0006 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034875 pacid=23142241 polypeptide=Lus10034875 locus=Lus10034875.g ID=Lus10034875.BGIv1.0 annot-version=v1.0 ATGGCTATGAGCAATAGATCAGGTATCGGCGGTCGAGGGGGTTTTACCAGTTACAGGCGCCCGCAACGCCAGCTCCCTCAACCTCGCCCATTCCGTCCTC CTACGGTTTCTGCTACCCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCCTCTGTCAAAACGTTTGAACCCAGGCGCGAAACTGAGGATCC CAATCACCACTCCTTTTTCCTTTTACGCCTTCATCTTCCCGGTTTTACAAAGCTGGAAGAAGTGAAGATTGCAAAGGCAACGGACACGGAGTCGGAGCAC ATCGTCCGGATTCAAGGTGACCGACTCGACCCGCTAGCCAACTGCCACTTCCGCTTTGACACCAATATTTCCATCCCGCCGGAATTCGACATCTCACCGG CGATTGACGCCAAGCTCGACACCGGTGTTCTCACCCTCACTTTCCCCAAATTCTCTTCGTCTTCATGCTCCTCCTCTGATTCCGAATCAGAATCAGAATT CTCCTCCTCCACGGACGATGACGACGACAAATCGCCAGAATCCGGCATGGTCAATTCCAATTCCAATCCCAATCCCAATCAGGCTGCAGGTACAATACAC AAGGATCTAGGAAACGCCAGTGAGATTAAGGTCGCGGCGGCAGCGGTGGCCACAAAGGAAAAGATTAGGGAGGCTGAGCACAAGAAACCGGAGGTCAAAT CTGGCGGAGGAGGTAGAGATCAGATTGGTAAAGAAGCGGCGCCGTTGATAATAAGAGGAAAGGATGCTAATTTAGCTAGAAAGAATGCGGTGGAAGACGG GAAAGTGAGAGAGGGAGTAATGAAGAATGAGAAGGAGATAGGCACACAAGTCATGATGGCGACGACGGTGGGAACGAGTGAGTTGGTGGTGAATATGGGG GCGGCCGTTGCCGTCATAGCTGCGCTCGGAACATATACTTACTATTTCATGTTTGGTTAA
AA sequence Show only first row Show all	>Lus10034875 pacid=23142241 polypeptide=Lus10034875 locus=Lus10034875.g ID=Lus10034875.BGIv1.0 annot-version=v1.0 MAMSNRSGIGGRGGFTSYRRPQRQLPQPRPFRPPTVSATPPPPPPPPPPPPPPSVKTFEPRRETEDPNHHSFFLLRLHLPGFTKLEEVKIAKATDTESEH IVRIQGDRLDPLANCHFRFDTNISIPPEFDISPAIDAKLDTGVLTLTFPKFSSSSCSSSDSESESEFSSSTDDDDDKSPESGMVNSNSNPNPNQAAGTIH KDLGNASEIKVAAAAVATKEKIREAEHKKPEVKSGGGGRDQIGKEAAPLIIRGKDANLARKNAVEDGKVREGVMKNEKEIGTQVMMATTVGTSELVVNMG AAVAVIAALGTYTYYFMFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	0	1
AT3G10680			HSP20-like chaperones superfam...		Lus10033409 [exp]	3.6	0.8641
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	5.5	0.8345
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	6.5	0.8286
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	7.9	0.8529
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	9.5	0.8341
AT3G09032			unknown protein		Lus10027777 [exp]	10.2	0.8259
AT5G43150			unknown protein		Lus10004910 [exp]	10.6	0.8347
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021377 [exp]	10.7	0.7488
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	11.6	0.8441
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	17.5	0.8258

Compare expression of checked genes

Lus10034875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.