Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62880 352 / 5e-125 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT3G48040 347 / 3e-123 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT1G75840 324 / 4e-114 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT1G20090 323 / 1e-113 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT4G35020 321 / 8e-113 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT3G51300 320 / 1e-112 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT2G17800 320 / 2e-112 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT4G35950 318 / 1e-111 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT5G45970 315 / 2e-110 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT4G28950 304 / 4e-106 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033411 [exp] 374 / 2e-132 AT3G48040 337 / 4e-118 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) Lus10033131 [exp] 322 / 3e-113 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 320 / 2e-112 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 318 / 3e-111 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10014123 [exp] 317 / 5e-111 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 315 / 1e-110 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10019786 [exp] 315 / 5e-110 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 311 / 9e-109 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10039899 [exp] 306 / 5e-107 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073000 [exp] 358 / 3e-127 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.012G077800 [exp] 357 / 8e-127 AT5G62880 359 / 6e-128 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.005G242000 [exp] 326 / 1e-114 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.002G019500 [exp] 325 / 2e-114 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.009G134600 [exp] 325 / 2e-114 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 324 / 4e-114 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.005G110700 [exp] 323 / 6e-114 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 323 / 6e-114 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.013G123800 [exp] 321 / 1e-112 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 317 / 2e-111 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10034876 pacid=23142188 polypeptide=Lus10034876 locus=Lus10034876.g ID=Lus10034876.BGIv1.0 annot-version=v1.0 ATGGCGTCGAGTGCTTCCAGGTTCATCAAATGTGTGACAGTGGGTGATGGAGCTGTGGGCAAGACTTGTATGCTTATCTGCTACACCAGTAACAAGTTCC CTACTGATTACGTACCCACAGTGTTCGACAATTTCAGTGCGAATGTAATAGTTGAAGGAACCACTGTCAACTTAGGCCTCTGGGATACAGCTGGTCAGGA AGATTACAACAGGCTAAGGCCATTGAGCTATAGAGGTGCAGATGTCTTTGTCTTGACTTTCTCACTAGTTAGCCGGGCTAGCTACGAGAATGTACTTAAG AAGTGGATTCCTGAGCTTCAGCATTATGCCCCTGGGATTCCTGTGGTCCTTGTTGGTACCAAATTAGATCTTCGCAACGACAAGCACTATATGGCTGATC ATCCTGGGTTGGTGCCTGTAACTACTGAACAGGGAGAAGAACTCCGGAAAATCATAGGTGCAACGTACTTCATCGAATGCAGCTCAAAAACTCAGCAGAA TGTGAAGACAGTGTTCGATGCCGCAATCAAGGTAGTAATCAAGCCGGCAACAAAAGGGAAAGACACGAAGAAAAAGAAGCCTCGTCGAGGATGCCTCTTG TCAGAATGTGCTTTGCGGGAGGAAATTGGTTTGCCTAAAATGAAATCGACCATGGCGGCAACAAAACTCTGA
AA sequence Show only first row Show all	>Lus10034876 pacid=23142188 polypeptide=Lus10034876 locus=Lus10034876.g ID=Lus10034876.BGIv1.0 annot-version=v1.0 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVIVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLTFSLVSRASYENVLK KWIPELQHYAPGIPVVLVGTKLDLRNDKHYMADHPGLVPVTTEQGEELRKIIGATYFIECSSKTQQNVKTVFDAAIKVVIKPATKGKDTKKKKPRRGCLL SECALREEIGLPKMKSTMAATKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	0	1
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10033411 [exp]	1.4	0.8454
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	2.2	0.8543
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	7.9	0.7881
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	9.5	0.7811
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	12.2	0.8097
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	14.1	0.7567
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10004964 [exp]	18.8	0.8060
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	22.5	0.7694
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	26.7	0.7885
					Lus10041155 [exp]	27.7	0.7378

Compare expression of checked genes

Lus10034876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.