Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40230 208 / 1e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 200 / 2e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G70260 197 / 3e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40210 188 / 4e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28050 187 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G60050 182 / 2e-54 Nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 179 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 179 / 3e-53 WAT1 Walls Are Thin 1 (.1.2) AT5G07050 177 / 3e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 176 / 7e-52 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033412 [exp] 372 / 4e-130 AT5G40230 121 / 7e-32 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 254 / 8e-83 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 240 / 4e-77 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039425 [exp] 223 / 3e-70 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 217 / 8e-68 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 196 / 2e-59 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 192 / 2e-58 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039478 [exp] 191 / 9e-58 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029180 [exp] 187 / 4e-57 AT3G28050 220 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073200 [exp] 376 / 1e-130 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G145800 [exp] 264 / 2e-86 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 244 / 8e-79 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G337100 [exp] 229 / 1e-72 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 216 / 1e-67 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 209 / 3e-65 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 189 / 6e-57 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 187 / 5e-56 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 184 / 4e-55 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.001G032500 [exp] 183 / 2e-54 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10034877 pacid=23142277 polypeptide=Lus10034877 locus=Lus10034877.g ID=Lus10034877.BGIv1.0 annot-version=v1.0 ATGGGATCCATCCGGTTTAAGGAGTGGATGCCGTTTGTGGGGATGTTGACGGTGGAATGTTTGGACGTTGGGTTAACGACTCTCAGTAAAGCCGCCATGT CTGCTGGGATGAGCCATTTCGTGTTCGTTGTCTACTCCAACGCCCTCGCAACTCTCATCTTATTCCCTTCTTCCTTCTTCTTCCACAGCCGACGCCAGGA GAAAAAGCCCATCACTTTCCCCTTGATCTGCAACTTCTTCCTTCTGGCTCTATTTGGGATCACTGTGATGCAGAATTGTGTTTTCACTGGAGTTGCCTAT AGCTCTCCAACACTTGCCTATGCTCTTAGCCAATTGATTCCTGCTTTCACTTTCCTTTTTGCTCTTCTCTCCAGGATGGAGAAGTTGGATTTGGGAAGCT CAAGGAGCCAAGTGAAAGTAGTGGCTACTATTGTATGCATTTCTGGAGCTTTAATCGTTATCTTCTATCAAGGACCTCCCATTTTTTCCCTTCATTCACT CCCCAATCCAACTGCTGTTCCCTCCATAACAGCAGCAAGTTCTTGGGTCATTGGAGGCCTTTTCCTTGCCATTGCTGGTCTCTCCATGTCAATCTTCAAC ATTTTTCAGGCATCCGTGCTAAAGGAGTTTGATTCCAACACAATCATTGTAGCCTTCTGTTGCCTATTTGGGAGCATTCAGTCTGCAGTGGTGTCTCTGA TGGCCGAGAAGGACCCAAATGCATGGAAGCTGCAAGCTAATATCCAGCTTGTGTCGGTGGTCTACTCTGCTATAGTTGGGAATGTTGGTACGTTGTGTGT GATGTCATGGTGCATCCAAGTGAAAGGGCCAGTTTTTGTGGCCATGTTCAAGCCCCTTATCATTGGAGCAGTGGTGATTGTAACAGGTTTCTATGGAGTA ATCTGGGCACAATCAGGCGATAATTGGAGAGCAGAGTCGTCTTCTTCAGTGGGGGCTAGTCTACTAGATAACTACGCTGATGGTGTGTAG
AA sequence Show only first row Show all	>Lus10034877 pacid=23142277 polypeptide=Lus10034877 locus=Lus10034877.g ID=Lus10034877.BGIv1.0 annot-version=v1.0 MGSIRFKEWMPFVGMLTVECLDVGLTTLSKAAMSAGMSHFVFVVYSNALATLILFPSSFFFHSRRQEKKPITFPLICNFFLLALFGITVMQNCVFTGVAY SSPTLAYALSQLIPAFTFLFALLSRMEKLDLGSSRSQVKVVATIVCISGALIVIFYQGPPIFSLHSLPNPTAVPSITAASSWVIGGLFLAIAGLSMSIFN IFQASVLKEFDSNTIIVAFCCLFGSIQSAVVSLMAEKDPNAWKLQANIQLVSVVYSAIVGNVGTLCVMSWCIQVKGPVFVAMFKPLIIGAVVIVTGFYGV IWAQSGDNWRAESSSSVGASLLDNYADGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	0	1
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10000067 [exp]	3.9	0.7568
AT1G11340			S-locus lectin protein kinase ...		Lus10006746 [exp]	11.0	0.7565
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	12.8	0.7617
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	13.4	0.7585
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Lus10013957 [exp]	15.7	0.7514
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	16.6	0.7565
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10021690 [exp]	17.5	0.7486
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10031604 [exp]	21.2	0.7515
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	21.5	0.7560
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	24.0	0.6602

Compare expression of checked genes

Lus10034877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.