Plant FIBer expression Database

Lus10034878 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033414
[exp]
402 / 3e-143 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G078600
[exp]
309 / 2e-106 ND /
PFAM info
Representative CDS sequence
>Lus10034878 pacid=23142172 polypeptide=Lus10034878 locus=Lus10034878.g ID=Lus10034878.BGIv1.0 annot-version=v1.0
ATGCCAGGTCCCGGTGCGCATCTGATGTACGCGATGGGATCGGGAGTCGGCCTAACTAGTTTAACCGGCGGCCGATTCACCCCTCACCATACTCTTATCT
ACACTGTCAACGCCTTCTTGGGTCCCGACATCGGCTCCTTTTCCGACTGGATCTCTTCCTTCTTCTCCCATTCCTCCTCCTCCTTCTTTTCCCGTCTCGT
CGACTACATTCATCATCCCTTTTACTACATCCTCATCCTCGGCTTCCCCTTATCCCTTTTCTACTCAAGGCTTTCCCATCTCTTGCTCCGCCGCAAGCTC
CTTGATTCCATTTCTGGGGTATCACTCGTAAGGAGGCAATGCTTCTTCTTAATAGCTGCAGGATCTTTGTCACACTTTTTCCTAGACCACTTATTCGAGG
AAAATGGACATTCCACAATGTATACTTGGATACTAAGCACTGGTTGGTGGGAAAATCGTGCCCCAATCAATCCAGACGCTGTACTTGTTACCGGCTTTCT
CTGCACTTGCTTAATGCTTGGGTTTGTTTATGTCAATAGGTTGAAGTCTAGTACCAAGTCTCTCAGGAAACAGACAAACCAGTCATACCAACTTATTCTG
GGTATAGCCTGCTGTTATTGCCTGTGGTGTGCAAGCCAGATTTACTGGGTAAATCCTCGGCAGCCGGCGGTTGGTGAAGAGGCTGATCTTGGGGTTATTG
CATTTCTAGCCATCTATTTCTTCCTGCCTCATTTCTTATGTGCCTTGTCGTTGAACCCAGCAGGTCATCAGCCGGATCCAATTCCACTGTAA
AA sequence
>Lus10034878 pacid=23142172 polypeptide=Lus10034878 locus=Lus10034878.g ID=Lus10034878.BGIv1.0 annot-version=v1.0
MPGPGAHLMYAMGSGVGLTSLTGGRFTPHHTLIYTVNAFLGPDIGSFSDWISSFFSHSSSSFFSRLVDYIHHPFYYILILGFPLSLFYSRLSHLLLRRKL
LDSISGVSLVRRQCFFLIAAGSLSHFFLDHLFEENGHSTMYTWILSTGWWENRAPINPDAVLVTGFLCTCLMLGFVYVNRLKSSTKSLRKQTNQSYQLIL
GIACCYCLWCASQIYWVNPRQPAVGEEADLGVIAFLAIYFFLPHFLCALSLNPAGHQPDPIPL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10034878
[exp]
0 1
AT5G01090 Concanavalin A-like lectin fam... Lus10017194
[exp]
2.8 0.8224
AT2G18910 hydroxyproline-rich glycoprote... Lus10025469
[exp]
9.8 0.7825
AT3G52500 Eukaryotic aspartyl protease f... Lus10013325
[exp]
9.9 0.8080
AT2G18910 hydroxyproline-rich glycoprote... Lus10006958
[exp]
10.4 0.8094
AT2G40070 unknown protein Lus10030402
[exp]
13.2 0.8113
AT2G27920 SCPL51 serine carboxypeptidase-like 5... Lus10041352
[exp]
14.1 0.8011
AT5G17210 Protein of unknown function (D... Lus10010077
[exp]
16.5 0.8079
AT3G63170 Chalcone-flavanone isomerase f... Lus10042591
[exp]
17.7 0.8159
AT4G22910 CCS52A1, FZR2 cell cycle switch protein 52 ... Lus10001192
[exp]
20.9 0.7681
AT1G14020 O-fucosyltransferase family pr... Lus10026624
[exp]
23.0 0.8164

Lus10034878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.