Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26210 154 / 4e-46 Ankyrin repeat family protein (.1.2.3) AT5G12320 41 / 0.0002 ankyrin repeat family protein (.1) AT3G58760 41 / 0.0007 Integrin-linked protein kinase family (.1) AT4G18950 41 / 0.001 Integrin-linked protein kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033419 [exp] 184 / 7e-58 AT2G26210 156 / 5e-49 Ankyrin repeat family protein (.1.2.3) Lus10036033 [exp] 46 / 6e-06 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10009696 [exp] 42 / 0.0001 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10028039 [exp] 42 / 0.0003 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10003748 [exp] 42 / 0.0005 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10002765 [exp] 39 / 0.001 AT4G18950 132 / 1e-37 Integrin-linked protein kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217100 [exp] 206 / 5e-65 AT2G26210 209 / 8e-68 Ankyrin repeat family protein (.1.2.3) Potri.018G047000 [exp] 205 / 2e-64 AT2G26210 217 / 4e-71 Ankyrin repeat family protein (.1.2.3) Potri.010G185200 [exp] 50 / 8e-07 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.009G070700 [exp] 48 / 8e-07 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.001G276100 [exp] 43 / 7e-05 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.007G060400 [exp] 43 / 0.0002 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.006G154600 [exp] 43 / 0.0002 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.013G062000 [exp] 42 / 0.0006 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.018G071400 [exp] 42 / 0.0006 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.005G105800 [exp] 41 / 0.001 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10034882 pacid=23142197 polypeptide=Lus10034882 locus=Lus10034882.g ID=Lus10034882.BGIv1.0 annot-version=v1.0 ATGTGGAGGACTGTTGTTGTTGAGGTGCAAAACCCGGGGGTCCCTGGTTATATGAATAAATCATGGGCCGTGAATCATCAAACAAGTACATATCCTGTAA ACTCCATAACAGATCAAGTTTCTAGGTTAGAAATTGAGGAAGAAGTTGAACCAACCAAAAATTTGGGTTCACAATATCAGTCCAACGCAACTGTTGTAGA ATGCAAATGTGGAATGCCTTTATGCATCTGTCAAGCTCCACCCACAACTACTGAAATTGCTGCACCCCAGGCAAAAGCAGCATTTGCATCACATTCAAAT CCAAGACCTAAGAAGATAGATGCAACTTCTAAAATCAGAGCTTCCAGTTCCAGTGCCAATCCTGTTTCGATTTCCAACCATAGCCAGATGACTAGTGGCG CTGCTGATAAACCTCAGAAGCATTATGAAGCTAACGGGGAGGGTTTAAGGGAAGCGATAAAGAATGATGATTCTGCTGCTGTAAGGAAGCTTGTCAGTCA GGGTGTAGATGCAAATTATCAAGACCGACAAGGAATGTCTCTCCTACATATGGCTGCTGTATTCAACCGAACGGACATTGTCTTTATCCTGATGGAATCT GGAGCAAGTCTAGACTGCAGAAACCCGCAAGTGAATGGCCCCGCTTTACTCGCTATCTCAGTATCCCCCTTGATTCACAGAGGGAGAGAGAGAAACGGAG CGTACTTGGCACTGTTTGCTGTGAGTACCTCCGCCTCTCAGATTGCCAAACACCCAAAGTCCTCGAATACGTCGACGACCCCGCCGATAACGAGATCGAA TGCGCTTTCGGATTCCCCCTGTCAAATCCTCCGCCGCCGCAATTATTCCACCGCCTTCCGCACTGCCACCACCTTGTTGAATTTGAATTGGTTTGACCGA GGCTGGCTGGCTGGCTGGCTGGCCTAA
AA sequence Show only first row Show all	>Lus10034882 pacid=23142197 polypeptide=Lus10034882 locus=Lus10034882.g ID=Lus10034882.BGIv1.0 annot-version=v1.0 MWRTVVVEVQNPGVPGYMNKSWAVNHQTSTYPVNSITDQVSRLEIEEEVEPTKNLGSQYQSNATVVECKCGMPLCICQAPPTTTEIAAPQAKAAFASHSN PRPKKIDATSKIRASSSSANPVSISNHSQMTSGAADKPQKHYEANGEGLREAIKNDDSAAVRKLVSQGVDANYQDRQGMSLLHMAAVFNRTDIVFILMES GASLDCRNPQVNGPALLAISVSPLIHRGRERNGAYLALFAVSTSASQIAKHPKSSNTSTTPPITRSNALSDSPCQILRRRNYSTAFRTATTLLNLNWFDR GWLAGWLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26210			Ankyrin repeat family protein ...		Lus10034882 [exp]	0	1
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10042530 [exp]	8.3	0.7501
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	8.8	0.8377
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	10.7	0.8199
AT5G55060			unknown protein		Lus10021546 [exp]	26.6	0.8174
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10009335 [exp]	26.8	0.7657
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	30.8	0.7961
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	33.9	0.7868
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	34.3	0.7769
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	50.1	0.7826
AT4G30830			Protein of unknown function, D...		Lus10036599 [exp]	58.9	0.7798

Compare expression of checked genes

Lus10034882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.