Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27450 365 / 1e-128 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 327 / 1e-113 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT5G43830 226 / 4e-74 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 214 / 1e-69 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G19140 189 / 1e-59 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT5G10240 55 / 1e-08 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 55 / 2e-08 ASN2 asparagine synthetase 2 (.1.2) AT3G47340 50 / 7e-07 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033418 [exp] 504 / 0 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 256 / 2e-85 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10011191 [exp] 251 / 1e-83 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10041181 [exp] 221 / 6e-72 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10006624 [exp] 218 / 6e-71 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10039382 [exp] 217 / 2e-70 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10010505 [exp] 189 / 1e-59 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10034038 [exp] 186 / 1e-58 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10021899 [exp] 95 / 1e-21 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122100 [exp] 372 / 1e-131 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 367 / 1e-129 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 311 / 1e-107 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 300 / 2e-103 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G158400 [exp] 231 / 7e-76 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 226 / 3e-74 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G203400 [exp] 183 / 1e-57 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.001G278400 [exp] 56 / 6e-09 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.009G072900 [exp] 55 / 2e-08 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 45 / 3e-05 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10034883 pacid=23142294 polypeptide=Lus10034883 locus=Lus10034883.g ID=Lus10034883.BGIv1.0 annot-version=v1.0 ATGTTGGGGATATTCCAAAAAACTTGCGCTCACCCACCGGAGGAGTTGAACAGCCCATCACAAACCAAGCATCCAAAGATGCTTCCAGAAGCGCTGCTGA CGGAGTTCATCGCCCGCCACTCGAACAACTCTTTCTCCGTCAGCTTCGGTGCCGAATCGGCGGCGGCGTTGGGTTACGTCCGACCAGAGAACCCTTTCTC CCGCGGGCACCAGAGGCTGTTCTGCGCCGTGGATGAGATGTACTGCCATTTCGTAGGAAGCTTGAATAACTTGTGTAGCCTGAACCGGCAGTACGGGTTG ACGGGGAGTTGCAGCAGCAACGAGGCGATGCTTGTAATCGAGGCTTATAGAACGCTTAGAGACAGAGGACCTTACCCTGCTGACCAGGTTGTTAAGGATT TTGATGGGAGCTTTGCCTTCCTTGTTTATGATAGTAAGGCTGCTACTGTCTTTGTTGCCCTGTCGTCAGATGGGAAAGTGAAACTATACTGGGGGATCGC AGCTGATGGGTCGGTGGTGATATGCGATGACGTGCAAGTGATTAAATCTGGCTGTGCAAAGTCTTTTGCTCCTTTCCCCCCTGGGTTCATATTCCACAGT GAAGGAGGGCTTATGAACTTCGAACATCCGATGCATAAAATAAGAGCAATCCCAAGAACGGATAGCGAAGGAGTGGTGTGTGGGGCCAATTTCAAGGTTG ATTTATATCAAAGGATCAACAGTATTCCTCGCAACGGAAGTGCCGCTAATTGGACCCAATGGGACTCCCATTCCTAA
AA sequence Show only first row Show all	>Lus10034883 pacid=23142294 polypeptide=Lus10034883 locus=Lus10034883.g ID=Lus10034883.BGIv1.0 annot-version=v1.0 MLGIFQKTCAHPPEELNSPSQTKHPKMLPEALLTEFIARHSNNSFSVSFGAESAAALGYVRPENPFSRGHQRLFCAVDEMYCHFVGSLNNLCSLNRQYGL TGSCSSNEAMLVIEAYRTLRDRGPYPADQVVKDFDGSFAFLVYDSKAATVFVALSSDGKVKLYWGIAADGSVVICDDVQVIKSGCAKSFAPFPPGFIFHS EGGLMNFEHPMHKIRAIPRTDSEGVVCGANFKVDLYQRINSIPRNGSAANWTQWDSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	0	1
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	3.2	0.9299
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	4.2	0.9157
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	5.3	0.8797
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10041546 [exp]	5.7	0.9011
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	7.1	0.8658
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	10.0	0.8831
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	10.8	0.9110
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	12.2	0.9036
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	12.6	0.8776
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	13.0	0.9212

Compare expression of checked genes

Lus10034883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.