Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20810 209 / 4e-70 SAUR-like auxin-responsive protein family (.1.2) AT3G43120 201 / 6e-67 SAUR-like auxin-responsive protein family (.1) AT2G24400 99 / 1e-26 SAUR-like auxin-responsive protein family (.1) AT4G31320 94 / 2e-24 SAUR-like auxin-responsive protein family (.1) AT2G18010 86 / 6e-22 SAUR-like auxin-responsive protein family (.1) AT2G21220 81 / 4e-20 SAUR-like auxin-responsive protein family (.1) AT4G34800 79 / 2e-19 SAUR-like auxin-responsive protein family (.1) AT1G19830 79 / 2e-19 SAUR-like auxin-responsive protein family (.1) AT1G75580 77 / 1e-18 SAUR-like auxin-responsive protein family (.1) AT4G38840 77 / 1e-18 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026977 [exp] 87 / 1e-21 AT2G24400 184 / 1e-59 SAUR-like auxin-responsive protein family (.1) Lus10012189 [exp] 84 / 2e-21 AT4G34760 169 / 3e-56 SAUR-like auxin-responsive protein family (.1) Lus10007553 [exp] 84 / 4e-21 AT4G34760 168 / 9e-56 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 80 / 3e-19 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10029198 [exp] 79 / 3e-19 AT4G38840 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10025911 [exp] 78 / 3e-19 AT4G38840 118 / 4e-36 SAUR-like auxin-responsive protein family (.1) Lus10008999 [exp] 78 / 6e-19 AT4G38840 117 / 7e-36 SAUR-like auxin-responsive protein family (.1) Lus10008995 [exp] 78 / 6e-19 AT4G38840 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10009624 [exp] 77 / 7e-19 AT4G38840 119 / 9e-37 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137200 [exp] 234 / 2e-79 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2) Potri.018G063400 [exp] 219 / 4e-74 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.006G278100 [exp] 93 / 3e-24 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 92 / 4e-24 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 90 / 6e-23 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 83 / 4e-21 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 83 / 6e-21 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.008G037900 [exp] 81 / 6e-20 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.006G211000 [exp] 80 / 1e-19 AT2G36210 130 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.002G024500 [exp] 80 / 2e-19 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10034888 pacid=23142190 polypeptide=Lus10034888 locus=Lus10034888.g ID=Lus10034888.BGIv1.0 annot-version=v1.0 ATGGATGATCAAGTAAGCAATAATAATAAGGCAACAGGAATTCGACAGATTATTAGGCTAAGAGAACTTCTTCAGAAGTGGCAAACAGTGAGAACCGGGC CAAGGCCGAGCAACCCTCCTAGTAGTAACCAAGGTGGTGGTATCCCACCAGCAATTAACAAGAGGGTGGCATGTATTAGAAATATTTGTGATTCAGATGA GGAAGGGTGTCAAAGTCCAGAACCCCCAGTTGATGTCCCCAAAGGGTATCTCGCGGTTTATGTTGGGCCAGAGCTTCGGAGGTTTATCATCCCCACCAGT TACCTTAGCCACTCTTTGTTCAAAGTCCTGCTAGAAAAGACTGAAGAGGAGTTTGGGTTCGATCATAGCGGCGCACTCACTATCCCCTGCGAGATTGAGA CCTTCAAGTTTCTACTCAATTGTATGGAGCATCATCCTAAAGATGGCAATAACGACGGCCAGAGTAAGATGTCTTTCTTCTTCCCGACATATCTTGTGAT TGATGCTTCCATGATATGCATTTCTTGA
AA sequence Show only first row Show all	>Lus10034888 pacid=23142190 polypeptide=Lus10034888 locus=Lus10034888.g ID=Lus10034888.BGIv1.0 annot-version=v1.0 MDDQVSNNNKATGIRQIIRLRELLQKWQTVRTGPRPSNPPSSNQGGGIPPAINKRVACIRNICDSDEEGCQSPEPPVDVPKGYLAVYVGPELRRFIIPTS YLSHSLFKVLLEKTEEEFGFDHSGALTIPCEIETFKFLLNCMEHHPKDGNNDGQSKMSFFFPTYLVIDASMICIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20810			SAUR-like auxin-responsive pro...		Lus10034888 [exp]	0	1
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Lus10020334 [exp]	4.0	0.7463
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	4.2	0.7666
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	6.3	0.7663
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	7.5	0.7654
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	8.5	0.6561
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	8.7	0.7654
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	9.2	0.6580
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	9.7	0.7654
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	10.7	0.7654
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	12.1	0.7509

Compare expression of checked genes

Lus10034888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.