Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09190 114 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 67 / 5e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18520 66 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 62 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 62 / 2e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G04370 60 / 8e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39680 60 / 1e-09 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G36730 59 / 2e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 59 / 3e-09 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 58 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029853 [exp] 192 / 4e-57 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005499 [exp] 110 / 2e-29 ND / Lus10038610 [exp] 106 / 1e-27 ND / Lus10040010 [exp] 107 / 2e-27 ND / Lus10032723 [exp] 105 / 2e-25 ND / Lus10012295 [exp] 95 / 2e-22 ND / Lus10034914 [exp] 86 / 2e-20 ND / Lus10005064 [exp] 74 / 2e-14 AT2G21090 513 / 2e-179 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009070 [exp] 66 / 1e-11 AT2G37320 515 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019400 [exp] 145 / 7e-40 AT1G09190 574 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220600 [exp] 77 / 2e-15 AT3G26630 481 / 2e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 69 / 1e-12 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 68 / 2e-12 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 67 / 3e-12 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G105700 [exp] 66 / 7e-12 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G054000 [exp] 63 / 1e-10 AT1G28690 672 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G014900 [exp] 62 / 2e-10 AT5G59600 334 / 6e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 61 / 5e-10 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G073100 [exp] 60 / 6e-10 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034889 pacid=23142312 polypeptide=Lus10034889 locus=Lus10034889.g ID=Lus10034889.BGIv1.0 annot-version=v1.0 ATGGAGTACTCTGACCGTGTCTTTGACCAAACTCATAATCCGAACATATTCCTTTCCAATGCCATGATCAAGGGATATTCTGTTTGTGGACCGTTTGAGG AGTCCCTGCGTTTGTTCTCGTTGATGAAAAGGGAATGTGGCATTTGGGCTAACGAGTATTGTTGGTCCCGGATAATTGATGTGCAATTAAAACATTGTGG CGGACTACCGCCACTTCCAACTTACCTGAGAAATATTTACGGTGTGTGGTTTATTAGTGCAATATATTTACTCTATTCTAATCCTCTGCACCCCAACAAG TATACCTTTGCTCCTTTGCTCAAGGCGTGTTCTAGTCTTGGCGACCTTAGATTTGGGCAGTGTGCTCAGAAGAAGGTTGTGGCACGTGGGTTCGACGGGT TTAGCTCGATAAGGATTGGGGTTGTGGAGCTGTACACAACCTGCGGAGCTATGGAAGATGCACGGAAGGTGTTCGACGAAATGTGGGTCTGGAGGTGCTT CCAAAGGGAACCGATGGCAGGCTCGATCGAGAGGATGTGGTACACTAAGCAAGGGGATTATCTTGATGATGGAATCAGTCCGATTGGTGGTGATGAAGAT GTGTTAGAAGTGGTTGTAGTAGTAAAGGATGGGGTGGTGATCATTTACATTGAAGCCACTAACAATGTTGAAGTTGTATGTGACAATGCTTCTAACAGAG AGTCATACCATGGCTATGGAACGATCGATTCTTATGTTGAGTATTCTAAGATAGCAGAGGATGAAGGGATCATCCATCTCATAGATGATTTAGATAGAAC TTATGATCCTGAGTTCTATGAAGCCATGGAGAGTCTTGGGATTCTAGAGAAGAGGAGACCTAGAACTACTTATGATTTAGAAGGTGATGAGGAGGTTCAT TTTGGCTGGCACACCACAGAGATGTTGCGAGGGGTGCTAGAGCTACTGTTAAGAGAGTGA
AA sequence Show only first row Show all	>Lus10034889 pacid=23142312 polypeptide=Lus10034889 locus=Lus10034889.g ID=Lus10034889.BGIv1.0 annot-version=v1.0 MEYSDRVFDQTHNPNIFLSNAMIKGYSVCGPFEESLRLFSLMKRECGIWANEYCWSRIIDVQLKHCGGLPPLPTYLRNIYGVWFISAIYLLYSNPLHPNK YTFAPLLKACSSLGDLRFGQCAQKKVVARGFDGFSSIRIGVVELYTTCGAMEDARKVFDEMWVWRCFQREPMAGSIERMWYTKQGDYLDDGISPIGGDED VLEVVVVVKDGVVIIYIEATNNVEVVCDNASNRESYHGYGTIDSYVEYSKIAEDEGIIHLIDDLDRTYDPEFYEAMESLGILEKRRPRTTYDLEGDEEVH FGWHTTEMLRGVLELLLRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10034889 [exp]	0	1
					Lus10007398 [exp]	1.0	0.9962
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002818 [exp]	13.0	0.8577
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	24.2	0.8887
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	28.1	0.8878
					Lus10011992 [exp]	29.9	0.8281
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	34.5	0.8871
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	34.8	0.8843
AT1G72490			unknown protein		Lus10037689 [exp]	37.7	0.8851
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	45.2	0.8832
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	54.8	0.8804

Compare expression of checked genes

Lus10034889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.