Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19230 1127 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G64060 988 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT5G47910 866 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT1G09090 840 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G51060 839 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 832 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G11230 816 / 0 Riboflavin synthase-like superfamily protein (.1) AT4G25090 808 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 753 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 728 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033423 [exp] 1581 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10032308 [exp] 1003 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 971 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 952 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10029896 [exp] 875 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10043017 [exp] 868 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 867 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10032517 [exp] 860 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10020644 [exp] 831 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137300 [exp] 1367 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.003G133300 [exp] 1023 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 1015 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G159800 [exp] 892 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 889 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 870 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.015G109800 [exp] 858 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.005G026200 [exp] 855 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.006G097200 [exp] 744 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 710 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10034890 pacid=23142180 polypeptide=Lus10034890 locus=Lus10034890.g ID=Lus10034890.BGIv1.0 annot-version=v1.0 ATGAGATCATCATCTCCTTCCTTCGCCAGAAGCACCTCCGGCAAGCTCTCCAATTACGCTCGCTCCTTTGACTTGCCTGATGACGACGATAACGATGATT GCGACTCCGAACTCGGTGACGTCAGCACTGGCTCAATGCTGCCCATCTTCCTCAACGACATCAGGCGAAACCACCGCAATGAGCTGGTGGAGATCACGCT GGAGTTAGATGACGACTCCACCATTGTTCTCTGCAGCGTCACGCCGCCGCCTACAGCTACTCCGTCAGGCTCAGCTGCCGCCCCCACTCCTGCCGCCTCC ACTCCTGATCATCACCCGAACAAGAGCCTCTGGAGGAGCTTATCTGCCACATCCAGGATAAGGAAGAAGTTCGGGTGGTTGAGATCGGGATCGTCGAGGA CCACCGCCTCAGAGATCGACGGAAGGGTTATCACGGAGAGAGATGCAAGGAGAATCAGGGCCAACCTCCAGCGGTCAAAGTCAAGCGCGGAGCGGGCACT GAAGGGGCTCAAGTTCATAAGCAAGGCCAGCAGCAGCACGGCAGCCGGTGGGGGCGGCGAGGCCGAGCAGCTGGTGGGGGGGGACGCCGAGCGGCGGTGG CGGCGAGTCGAGTCTCGGTTTGACTCTCTGTCGTCCATAGACGGATTCCTCGCAAGGGATGATTTCGGAGAGTGCATAGGGATGGTGGATTCGAAAGAGT TCGCGGGGAGTATATTCGACGCATTGGCGAGGAGGAAAGGGCAGAGGATAAGTAGAATTACAAAGGCAGAGCTTCGGGAGTTTTGGTTGCAGATTACAGA CAATAGTTTTGATGCACGCTTACAAATTTTCTTCGACATGGCAGACAGCAATGATGATGGACGAATCACAAGGGATGAGGTGCAGGAGTTGATAACACTG AGTGCTTCAGCCAATAAACTCTCCAAATTGAAAGAACAAGCTGAAGAATATGCAGGGTTGATAATGGAGGAGCTTGATCCTGAAAATCTTGGATACATTG AGCTATGGCAGTTAGAAACACTTCTTCTTCGAAGAGACGCATACATGAACTACAGCAGGCCACTAAGCACGGCGAGCTCGAGGTGGAGTCAGAATTTGAG CACTAGATTTCAACCCCAAATCATGGGTCGCAGGCTTACTTTTATGCTAAGGAGCATCATTGTCGAGAACTGGCAACGTGGTTGTATATTGACTCTATGG CTAATGCTAATGACTCTGCTCTTCGCATGGAAGTTCGTCAATTATAGAAACAGAGCTGCATTTCGAGTAATGGGCTACTGCCTCGCAACTGCCAAAGGCG CTGCCGAGACTCTTAAGCTCAACATGGCTCTAATCCTCTTGCCAGTCTGTCGAAACACTATCACTTGGCTTCGATCCACCAAAGTCAGGACCGTCATTCC TTTTGACGACAACATCAACTTCCACAAGATGATTGCAGTTTCAATAATAATCGGGGTTGTTCTACACGCGGGGAACCATTTGGTCTGTGATTTCCCTCGT TTGACGAATGCCTCCCCGGAAAAGTTTTCCCTGATAGCATCTGATTTCGACGGCAATAAACCCACCTACAGAGATCTTATAAGCGGCGTTGAAGGCATGA CAGGAATCTCCATGGTGGTCCTAATGGCCATTGCATTTACTCTCGCAACTAGTCAGTTCAGGAGGAATTTAGTGAAGTTGCCGGCGCCTTTCAACAGATT GACTGGGTTCAACGCCTTCTGGTACTCTCATCACCTTACCGGAATAGTCTACATCTTGCTGTTTGTACATGGGACTTTCCTCTACCTCACTGACAAGTGG TATGACAAAAATACATGGATGTATCTATCTGTTCCGCTACTGCTCTACGTAGTAGAGAGGACCATTCGAACATGTCGATCAGAGCATCAGTCTGCCAAGA TTATAAGGGTAACTGTTTTGCCAGGAGATGTTTTCAGCTTAACAATGTCGAAGCCACAAGGGTTTAAGTACAAGAGCGGCCAGTACATATTTCTTCAATG TCCATCCATTTCTCCCTTCGAGTGGCATCCATTCTCGATAACCTCAGCTCCAGGAGACGAATACCTTAGTGTCCATGTCCGGATTGTGGGTGACTGGACA CAAGAATTGAAGCGAGTTTTCACTGAGGTTAACGACTCACCAACTGTTATTGGCCGAGCTAAATTCGGTCAACTTGGCCATATGGATCATAGAGGGCAAC CAAAACTGTTTGTTGACGGTCCATATGGGGCTCCCGCACAAGACTATAAGAACTATGATGTACTGCTCCTTGTAGGGTTGGGTATTGGGGCTACCCCTTT CATCAGCATTCTCAGAGATCTGTTAAACAACACCAGAACAACAGACTATCAGACGGACTCAAATACAGATACAAGCAGATCAGATTACAGTTCAAACAGT TGTGCATCTTCGAATGGGACAGGAGGGAACACTATTAAGAAGAAAACCGTGAGAACAACCAACGCTCACTTCTACTGGGTTACAAGAGAACCAGGGTCAT TTGAATGGTTTAAAGGAGTCATGGACGAAGTTGCAGAAATGGACCACAAAGGCCAAATTGAGATGCACAACTACTTGACAAGTGTATACGAAGAGGGTGA TGCAAGGTCAACTTTGATTACCATGGTTCAAGCGCTCAACCACGCCAAACATGGAGTTGACATCGTTTCTGGCACTAGAGTAAGAACACACTTCGCCAGA CCAAATTGGAGAGAAGTTTTCACCAAAATAGCTTCAAAGCATCCATTCGCAACAATAGGGGTGTTCTATTGCGGGATGCCTATGTTAGCAAAGGAGCTAA AGAAGCTAAGTCAAGAGATGAGTCATAGGACGTCTACAAGGTTCGAATTTCACAAGGAATACTTCTGA
AA sequence Show only first row Show all	>Lus10034890 pacid=23142180 polypeptide=Lus10034890 locus=Lus10034890.g ID=Lus10034890.BGIv1.0 annot-version=v1.0 MRSSSPSFARSTSGKLSNYARSFDLPDDDDNDDCDSELGDVSTGSMLPIFLNDIRRNHRNELVEITLELDDDSTIVLCSVTPPPTATPSGSAAAPTPAAS TPDHHPNKSLWRSLSATSRIRKKFGWLRSGSSRTTASEIDGRVITERDARRIRANLQRSKSSAERALKGLKFISKASSSTAAGGGGEAEQLVGGDAERRW RRVESRFDSLSSIDGFLARDDFGECIGMVDSKEFAGSIFDALARRKGQRISRITKAELREFWLQITDNSFDARLQIFFDMADSNDDGRITRDEVQELITL SASANKLSKLKEQAEEYAGLIMEELDPENLGYIELWQLETLLLRRDAYMNYSRPLSTASSRWSQNLSTRFQPQIMGRRLTFMLRSIIVENWQRGCILTLW LMLMTLLFAWKFVNYRNRAAFRVMGYCLATAKGAAETLKLNMALILLPVCRNTITWLRSTKVRTVIPFDDNINFHKMIAVSIIIGVVLHAGNHLVCDFPR LTNASPEKFSLIASDFDGNKPTYRDLISGVEGMTGISMVVLMAIAFTLATSQFRRNLVKLPAPFNRLTGFNAFWYSHHLTGIVYILLFVHGTFLYLTDKW YDKNTWMYLSVPLLLYVVERTIRTCRSEHQSAKIIRVTVLPGDVFSLTMSKPQGFKYKSGQYIFLQCPSISPFEWHPFSITSAPGDEYLSVHVRIVGDWT QELKRVFTEVNDSPTVIGRAKFGQLGHMDHRGQPKLFVDGPYGAPAQDYKNYDVLLLVGLGIGATPFISILRDLLNNTRTTDYQTDSNTDTSRSDYSSNS CASSNGTGGNTIKKKTVRTTNAHFYWVTREPGSFEWFKGVMDEVAEMDHKGQIEMHNYLTSVYEEGDARSTLITMVQALNHAKHGVDIVSGTRVRTHFAR PNWREVFTKIASKHPFATIGVFYCGMPMLAKELKKLSQEMSHRTSTRFEFHKEYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	0	1
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	1.7	0.9362
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	4.5	0.9095
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	4.5	0.9041
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	5.1	0.8806
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	5.7	0.8847
					Lus10017937 [exp]	6.3	0.8890
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	6.3	0.9037
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	6.9	0.8840
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10027143 [exp]	7.3	0.8885
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	7.7	0.8862

Compare expression of checked genes

Lus10034890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.