Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26060 281 / 5e-97 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) AT5G06290 77 / 5e-17 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 74 / 1e-15 Thioredoxin superfamily protein (.1) AT1G48130 47 / 3e-06 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT4G31870 39 / 0.0008 ATGPX7 glutathione peroxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033424 [exp] 407 / 9e-147 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10021295 [exp] 83 / 5e-19 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10016969 [exp] 82 / 7e-19 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10018342 [exp] 42 / 9e-05 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10017112 [exp] 41 / 0.0003 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10003421 [exp] 41 / 0.0003 AT4G31870 319 / 9e-110 glutathione peroxidase 7 (.1) Lus10026887 [exp] 40 / 0.0005 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137500 [exp] 323 / 9e-114 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.018G063300 [exp] 306 / 4e-107 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G204900 [exp] 81 / 3e-18 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.016G072100 [exp] 76 / 2e-16 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.008G099900 [exp] 44 / 3e-05 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10034892 pacid=23142269 polypeptide=Lus10034892 locus=Lus10034892.g ID=Lus10034892.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTTCGCTTCCGAAGCATTGTTCAATTTGTCCAACCATCTGGTCTCCTAATAAACCCATTCACCCATCTTCCCAACATCTACCAACAAATT CTCAGCCCAAATTCCATGGCCTCGTCTTCTCCAACTCTCTCACTGCTCCTCGTCGTCGCGCTTTCATGACCTCCATTGTCGCTGCAAAGGTGAACAAAGG ACAGGTACCACCATCCTTCACATTGAAAGATCAAGATGGTAAGGCTGTAAGCCTCAACAAGTTCAAGGGCAAGCCTGTAGTTGTCTATTTCTATCCGGCT GATGAAACCCCTGGCTGCACTAAACAGGCTTGTGCTTTCAGGGATTCGTATGAGAAGTTTAAGAAAGCAGGAGCTGAGGTTGTTGGGATTAGTGGTGATG ATTCATCGTCTCACAAGTCATTCGCTAAGAAGTATAGGCTGCCATTTACATTACTTAGCGACGAGGGTAACAAAGTAAGGAAAGATTGGGGTGTCCCTTC TGATCTTTTTGGAGCATTGCCTGGGAGACAGACTTATGTTTTGGATAAGAAGGGAGTGGTTCAGCTCATCTATAATAACCAGTTCCAACCTGAGAAGCAC ATTGACGAAACTCTCAAGCTACTTCAAACGCTTTGA
AA sequence Show only first row Show all	>Lus10034892 pacid=23142269 polypeptide=Lus10034892 locus=Lus10034892.g ID=Lus10034892.BGIv1.0 annot-version=v1.0 MASISLPKHCSICPTIWSPNKPIHPSSQHLPTNSQPKFHGLVFSNSLTAPRRRAFMTSIVAAKVNKGQVPPSFTLKDQDGKAVSLNKFKGKPVVVYFYPA DETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKSFAKKYRLPFTLLSDEGNKVRKDWGVPSDLFGALPGRQTYVLDKKGVVQLIYNNQFQPEKH IDETLKLLQTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10034892 [exp]	0	1
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	1.0	0.9732
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	5.3	0.9437
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015142 [exp]	5.8	0.9193
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10036207 [exp]	7.7	0.9272
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	8.0	0.9388
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	9.5	0.9383
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	11.0	0.9363
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10015207 [exp]	12.0	0.9203
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	13.7	0.9392
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	14.4	0.9282

Compare expression of checked genes

Lus10034892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.