Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61680 333 / 1e-113 Pectin lyase-like superfamily protein (.1) AT1G69940 331 / 3e-112 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07410 330 / 6e-112 Pectin lyase-like superfamily protein (.1) AT5G07430 308 / 3e-103 Pectin lyase-like superfamily protein (.1) AT5G07420 291 / 6e-97 Pectin lyase-like superfamily protein (.1) AT5G19730 256 / 1e-82 Pectin lyase-like superfamily protein (.1) AT1G05310 247 / 3e-79 Pectin lyase-like superfamily protein (.1) AT5G47500 234 / 2e-74 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36700 229 / 5e-73 Pectin lyase-like superfamily protein (.1) AT2G36710 229 / 5e-72 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016711 [exp] 303 / 3e-101 AT1G69940 400 / 4e-139 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 263 / 3e-85 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 261 / 5e-85 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 258 / 3e-84 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 259 / 4e-84 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 258 / 2e-83 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 245 / 2e-78 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 241 / 2e-77 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 236 / 3e-74 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137100 [exp] 441 / 3e-155 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G114900 [exp] 353 / 3e-121 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 353 / 3e-121 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 353 / 3e-121 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 353 / 3e-121 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 353 / 4e-121 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 350 / 1e-119 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 350 / 1e-119 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.015G110700 [exp] 346 / 3e-118 AT1G69940 393 / 2e-136 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 273 / 2e-89 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10034893 pacid=23142210 polypeptide=Lus10034893 locus=Lus10034893.g ID=Lus10034893.BGIv1.0 annot-version=v1.0 ATGCCGCATGCAACATCGCACCCTCAGCTAGTCCCCTCGGATCCAACCAAGGTGGCATCGTGGGTGGCTCATCACAACCAAGGCAGTCATGACCAGCGGC TCTCGGCGGCCGAAACCGGAGAGCCAAGGCTCATCAAGGTGGCTGCCGCCAATAAGCCAGGGGCCGATTTCCGTACAGTTACTGAAGCGATCAACAGCAT ACCGGAGGGGAATAGTAGACGGACAGTGGTTTGGATCGGAGGAGGGTATTACTGGGAGAAGATCACCATCTCGGTTAGAAAGCCTTTTGTTACTCTGTAC GGAGATCCCAATGACATGCCAACCATCGTTTTTAACGGCACTGCTTTACAATATGGGACCGTGTACAGTGCAACCGTGGCTGTTGAGAGCGATTATTTCA TGGCTGTCAACGTCATCTTCCAGAATGCGGCTCCAATGCCGACCATACAAAGTATAGGGGCTCAAGCAGTTGCGATGAGGATCTCAGGAGATAAAGCTGC ATTCTACAACTGCCATTTCTTAGGGTTTCAGGATACTTTGTGTGACGACCGTGGCCGCCACTTGTTCATGGACTGTTATGTCCGTGGCACTGTCGACTTC ATCTTCGGCAATGGCCAATCCCTCTATTTGAACGTAACGTTAGAGTCAGTGGCAGAGGAGACTGGCGTTATAACAGCTCAAGCAAGGGAGAAATCAAATG AAGGGAGCGGATTTTGCTTCATTCACTGTAACATACAGGGTTCTAACAAGGATTATACTACGTATTTGGGGAGAGCATGGAAGGAGAGTCCAAGGGTTAT TTTTGCATACACTTTCATGCCAACTCTCGTCAACCCTGCTGGTTGGTACTCCGGCCACGATCCTAATCCTCGTATCCAGGGTGTGTACTATGGAGAGTAC AAGTGCAAGGGACCAGGAGCATTGGCAACTGGACGAGTTAGATACGCAAAGTTTCTTAATGATGATGAAGCAAAGCCTTTCTTAAGCATGACATTTATCA ATGCACACAAATGGCTCCTCCCCCCTCCACAACTCACCACCTAA
AA sequence Show only first row Show all	>Lus10034893 pacid=23142210 polypeptide=Lus10034893 locus=Lus10034893.g ID=Lus10034893.BGIv1.0 annot-version=v1.0 MPHATSHPQLVPSDPTKVASWVAHHNQGSHDQRLSAAETGEPRLIKVAAANKPGADFRTVTEAINSIPEGNSRRTVVWIGGGYYWEKITISVRKPFVTLY GDPNDMPTIVFNGTALQYGTVYSATVAVESDYFMAVNVIFQNAAPMPTIQSIGAQAVAMRISGDKAAFYNCHFLGFQDTLCDDRGRHLFMDCYVRGTVDF IFGNGQSLYLNVTLESVAEETGVITAQAREKSNEGSGFCFIHCNIQGSNKDYTTYLGRAWKESPRVIFAYTFMPTLVNPAGWYSGHDPNPRIQGVYYGEY KCKGPGALATGRVRYAKFLNDDEAKPFLSMTFINAHKWLLPPPQLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	0	1
					Lus10033897 [exp]	3.3	0.9371
AT4G20820			FAD-binding Berberine family p...		Lus10038436 [exp]	4.2	0.9218
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10001293 [exp]	6.7	0.8815
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	7.5	0.9184
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	9.6	0.8496
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	10.0	0.9139
AT2G31081		CLE4	CLAVATA3/ESR-RELATED 4 (.1)		Lus10015304 [exp]	10.7	0.8300
AT4G03230			S-locus lectin protein kinase ...		Lus10018512 [exp]	12.0	0.8836
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	12.6	0.9133
AT3G50990			Peroxidase superfamily protein...		Lus10030940 [exp]	14.7	0.7829

Compare expression of checked genes

Lus10034893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.