Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03140 662 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G50790 159 / 9e-42 esterase/lipase/thioesterase family protein (.1) AT1G34340 112 / 4e-25 alpha/beta-Hydrolases superfamily protein (.1) AT5G49950 108 / 6e-24 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033426 [exp] 1710 / 0 AT2G03140 1245 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001673 [exp] 154 / 7e-40 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 132 / 1e-32 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10035744 [exp] 112 / 6e-25 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 109 / 5e-24 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 108 / 6e-24 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 105 / 9e-23 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 103 / 5e-22 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G136900 [exp] 849 / 0 AT2G03140 1356 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G146500 [exp] 157 / 5e-41 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.013G115000 [exp] 106 / 3e-23 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G223100 [exp] 100 / 3e-21 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10034894 pacid=23142173 polypeptide=Lus10034894 locus=Lus10034894.g ID=Lus10034894.BGIv1.0 annot-version=v1.0 ATGAATTCCACACTTCAACTTCAACTTCATCCCCCGCCACACCTTAACCTTCTCCTCTTCCGTCGCAGCTTCCCTGTCCCACCTCCTCAATTCCGTCTCT ACCACCCCCGCCACCGTCTCAAATCCCTCCTCCTCTGCACCGCTTTCCTTGACCCCTTCCAGACTTTCCTCACTCAGGTTCCCTCCTCTAATTCACTAGA CCTTCTCGCTCCAGCCATCGGTCTCGCTTCCGGTTTGAGTCTCTACCTCAACCAAATCAAGTCCAGGAACAATCCCGACCGCCAAGCATCCTCTGATATC GGCGAATGGATTCTTTTCACCAGTCCCACGCCGTTCAATAGGTTTGTTGTTCTTTGTTGCCCTTCCATATCCTTTCAAGGGAGCGAGCTGCTCGAGGGAG TCAGTGAGAAGTTGGTGGAGCAGGACATGCATTTCGTGCGGCTGAACAGCGCCGGACTTCAGCTAAAGGAAAATGGCGATGGCGGCTCGATTGTGGATAA ATTGAACTACCAACGACTTTGCGTGAGTATGGAGGACGGTGGGGTTGTGTCACTCGATTGGCCGGCGAATTTGAACTTCGAGGATGAGCATGGCTTGGAC ACTACTTTATTGCTGGTGCCAGGAACGCCGGACGGCAGCACGGATCATACTGTCAGATCATTTGTCTATGAAGCCCTGCGTCGCGGATTGTTCCCCATTG TTATGAACCCTAGAGGCTGTGCTGGTTCACCACTCACAACTGCTAGGTTGTTTTCAGCTGCTGACAGCGATGATATATCCACAGTTATTCAGTTAATCAA CAAAGCAAGGCCATGGACAACGTTGGTGGCTGTTGGATGGGGCTACGGTGCAAACATGCTAACAAAATATCTTGGAGAAGTTGGGGATAGGACTCCGCTT ACAGCTGCCACTTGCATTAACAACCCTCTTGACTTAAAGGAGGTCACTAGGAGCTCACCCTATCATGTAGGTCTGGATCAACAGCTCACTGCTGGGCTGG TTGATATTCTACGAGCTAACAAGGGACTGTTTCAAGGTAAAGCAAAAGGATTCGATGTGGACAAGGCTTTGTTAGCGAAATCTGTTCGAGATTTTGAGGA GGCAATATCCATGGTGTCTTATGGTTTCAAAGATATAGAAGAGTTCTATTCCAAATCCAACTCGGCACGTTTAGTAAACCATGTGAAAGTTCCTGTTCTC TTTATCCAGAATGATGATGACACTGTGCCACTCTTCTCAATTCCCCGCAGTTCAATCGCTGAAAATCCTTGTACTAACCTCCTTCTATGTTCTTGCCCAC CATCTGGAGCCAAAACAAACAGCAGAGCAGCTCTGTCTTGGTGCCAAAATCTTACAATGGAGTGGCTCACAGCTGTGGAGCTTGGACTCTTGAAGGGTCG TCATCCTCTTCTTACAGATTTAGATGTTACTATCAACCTATCTAAAGGATCAACTCTTTCAGAAAGTGCAGTGGTTGACATTGATGGTAAAAGTAACGAC CCCCTGGCTCTGACCGTAACTAATACCAATGGGAATTCAGTAGACCTTTCTAACCAGCTTCTTGAAGGTAGCTCTAGTGGCGAGCGAATTAATTCAGGAT CAGAACAAAACCATGACAATGATTTAGAAATTGAATGTGGATTACAAGAAGGAGAAAGACAGGTTGCGCAGAATACTTCAGATACAAAATTGCTTGAAGA AGAGTCACCAAATCCAGCGAACGTTGAAAACGGTGAAGTGCTACAATCAGCACAAGTAGTCATGAACATGCTTGACGTGGCTATGCCTGGTATTATGGCA GAAGATGAAAAGAAGAAGGTGTTGGCAGCTGTAAATCAAGGAGAGACGCTTTTGAAAGCTTTGGAAGGTGCTGTACCAGAAGAAGTTCGTGAAAAGCTAA CTACAGCAGCATCTGGAATTATGCAAGCTAATCGTATGAAATTAAAATTTGATGGACTGACGGGTACCAGAGATAATAAGCTGCCGAGTGTGTCAGGGTT CGAGTCAAATTCGCAAAGTGAATCAACTTCTCACAGCAAGCCAAAAGTCCCTCCATTAGATCAGATGAATATGAAAAATATTTCAACAGACATGAATGGT GATGATCAGTCCGGAGTCCAAGACTCTATTGGTGATTCAAAGCCTGTCTCTTCTGATAACTTAAAGAAATCTGTTGATTCAGGTCAGCCTCGGGATATGA CTGATCGACAACGTGATACTCTTGCTTCTTCTAGGGTGGGAATGAATGAGTCGGATCATGCTAGTGATGCAGCTACAGGAGAAAGTGTTGGGGATAAGGA ACTAGAAGCTAGTGTTGAGTCTGTTACTCAAGGGGCTGGTAGTACTGAGGAAGCCAGTACTAATGATCACGAATCGCAAAAATATGATAACTTATCAGCG CATCTAGAAATGGAAAAGGAGAACAATGATGGAGCAAAGGCTGTGGATCCTTCAAGTGATCAGAGTAAGGCCGCATCTGCTGATGCAAGTGAAGAAGAAA TCCGTAGTCCCCAATCGACAGGAAATGAAGGAAATGATGATCAGAAGAGTGATAAAAAAAGTGAGCAGCCTGCACTTGAACAAAACAAGCCTCCTATTTC TGACCCAAGTCCTCCTAATTTTGATGTCGTTCAAGCCTTGGACGCTTTCACGGGGATGGATGATGCTACTCAAGTAGCCGTTAATAGTGTTTTAGGTGTG ATTGAAAATATGATTGATCAGTTGCAAGAGGAGAAGGATGATAAAGATGACTTCAATGATGGAAATGAGGTTGAAGATGAGTCGAATGATCCTGGATCCA TTGAACAGAAGAATATCGATCAGTCAGCACAGGCTGGAAACATTTCTAGTAATGCTGAGAGGGTTGTCAATAACTATAGAAGTCCGGAGGAAACGCCGGA CCAGTTGTTTGGTTACAAGAGTGTGGTCAACTTTAATAGCATGACGAGTGACATTCCAATGCTTATAACCAAAAATCCCCAGAATGTTTACGTCCACGAG TGTCTTCTGGATAAGGAAAGTTTCAACAAGGCAGACAATGGTAGTGCCAACACAGAAGATCTTATACATTTTGTGAAGAACATTATCTTGGGTGCATTGA AGGTTGAGGTTTGTCGCAAGCTGAGTGTAGCTGAACTGAGAAAAATGAAATCTGATATTGGAAGCGATATTGAACTTCTGGCTAATGCTGTGTCTTTGGT TGTTGGGAATGACAAGCATCAAATCCGGAACTTCAATGAGAAAAACAGTATGGTCAATCATACTTCAGAAATAGCTGATTCCATACACGCTGAAAAAATT CTGGAGGCCATATCATCATCTTTCTTGCGAACAACTTATTTGAGAAAAATTTTGCCAGTAGGAGTGATAGTAGGTTGTACCTTAGCTGCTTTAAGGAAAC ATTTCAACATAACTACATTACCTGACGACCATCTTGAATCATATGATCAAAATAATAGATCTTTGGAAACTTATCAAGGTGAAATTAAGACGCAAAAGGA TGATGAAAAGCAAAGACTTGGAGTTCCTACTTCGAACCCTACTAGAAATAAAGAGGGTGACGATAATGTTTTCAAGAACATGAGCAATGATAGTGTTATG GTTGGTGCTGTTACTGCTGCCCTTGGAGCTTCTGCTTTGTTTGGACTACAGAACGAAAATGGGATAGTAGAAACCTCAGCAGAGTACATGAATGAGAGTG GAAGCCCTGAAATGGCTTTAGACAAGCTTGATGATGGAATGTCTGAGAACGATCAAAACAACGCAGTTGCAAGCTTTGCTGAGAAAGCCATGTCAGTTGC TGGTCCAGTGGTTCCTACAAAGGGAGATGGTGAGGTGGATGAAGACAGGCTAGTTTCAATGTTAGCCGGCCTGGGACAAAGAGGGGGCATTTTGAGAGTG GTCGGGAAAGTTGCTTTACTGTGGGGTGGTCTACGTGCAGCTATGAGTCTGACTGACAGGCTTATCTCATTTTTGGATATAGCTGACCGACCCTTTTACC AAAGGATTCTGGGGTTTGTTGGGATGGCTCTTGTTTTATGGTCACCGGTGGTTATCCCATTACTTCCGACACTTGTTCAGGGTTGGACGACTGGTACTCC TTCAAGGTTTGCTGAGCTTATATCAATTCTTGGCCTCTATGCTGCTATTTTGTTGCTTGTTATGAAGTGGGCCAGTAAAATACGTGGTTATGAACATCCA CTCAAACAATATGGACTTGATTTCACTACATTGCCTAAGATACAAAGCTTTCTCGCTGGTTTAGGTGGCGGAGTGGGACTCGTTTTACTTATGCAATCTG TAAATGTTTGCTTGGGCTATGCGAGCTTTTCTTGGCCCGCAAGTCATCCTCCTTCGGCGAATCTGATTGAATATCTGAAAGTGTACGGTAAAATGATTTT GTTTTCCGTACAAGGTACTATAACAGCAACCGCAGTTGTCCTTGTTGAAGAGCTGCTATTCAGGTCGTGGTTGCCTGGAGAAATTGCGGCGGACCTTGGT TATCATCGTGGAATCATCATTTCTGGACTTGTATTTGCACTTGCGCAGAGGTCTCCATTGACGGTCCCAGCACTCTGGCTTCTGTCTTTGGCTCTGTCCG GGCTAAGGGAAAGAAGCCAAGGCAGCCTTTTGACGGTGATTGGTTTACGGGCAGGAATGGTGGTTTCGAGCTTTGTTCTTCAGAGCAGAGGAGTCTTGAC GTACAAAGACACGCTCCCTTTCTGGGTCACAGGGACTCATCCCTTCCAACCTTTCAGTGGGGTCATCGGTCTTGCATTTTCTTTATCAATGGCGGTCCTT CTTTATCCGAGGCAGAAACTTGAAGACAATTGGAGAAACGTTGGGGATATATTTGGCCATATGGGGAAGCAGGAGAAGGGGAGGGAATAA
AA sequence Show only first row Show all	>Lus10034894 pacid=23142173 polypeptide=Lus10034894 locus=Lus10034894.g ID=Lus10034894.BGIv1.0 annot-version=v1.0 MNSTLQLQLHPPPHLNLLLFRRSFPVPPPQFRLYHPRHRLKSLLLCTAFLDPFQTFLTQVPSSNSLDLLAPAIGLASGLSLYLNQIKSRNNPDRQASSDI GEWILFTSPTPFNRFVVLCCPSISFQGSELLEGVSEKLVEQDMHFVRLNSAGLQLKENGDGGSIVDKLNYQRLCVSMEDGGVVSLDWPANLNFEDEHGLD TTLLLVPGTPDGSTDHTVRSFVYEALRRGLFPIVMNPRGCAGSPLTTARLFSAADSDDISTVIQLINKARPWTTLVAVGWGYGANMLTKYLGEVGDRTPL TAATCINNPLDLKEVTRSSPYHVGLDQQLTAGLVDILRANKGLFQGKAKGFDVDKALLAKSVRDFEEAISMVSYGFKDIEEFYSKSNSARLVNHVKVPVL FIQNDDDTVPLFSIPRSSIAENPCTNLLLCSCPPSGAKTNSRAALSWCQNLTMEWLTAVELGLLKGRHPLLTDLDVTINLSKGSTLSESAVVDIDGKSND PLALTVTNTNGNSVDLSNQLLEGSSSGERINSGSEQNHDNDLEIECGLQEGERQVAQNTSDTKLLEEESPNPANVENGEVLQSAQVVMNMLDVAMPGIMA EDEKKKVLAAVNQGETLLKALEGAVPEEVREKLTTAASGIMQANRMKLKFDGLTGTRDNKLPSVSGFESNSQSESTSHSKPKVPPLDQMNMKNISTDMNG DDQSGVQDSIGDSKPVSSDNLKKSVDSGQPRDMTDRQRDTLASSRVGMNESDHASDAATGESVGDKELEASVESVTQGAGSTEEASTNDHESQKYDNLSA HLEMEKENNDGAKAVDPSSDQSKAASADASEEEIRSPQSTGNEGNDDQKSDKKSEQPALEQNKPPISDPSPPNFDVVQALDAFTGMDDATQVAVNSVLGV IENMIDQLQEEKDDKDDFNDGNEVEDESNDPGSIEQKNIDQSAQAGNISSNAERVVNNYRSPEETPDQLFGYKSVVNFNSMTSDIPMLITKNPQNVYVHE CLLDKESFNKADNGSANTEDLIHFVKNIILGALKVEVCRKLSVAELRKMKSDIGSDIELLANAVSLVVGNDKHQIRNFNEKNSMVNHTSEIADSIHAEKI LEAISSSFLRTTYLRKILPVGVIVGCTLAALRKHFNITTLPDDHLESYDQNNRSLETYQGEIKTQKDDEKQRLGVPTSNPTRNKEGDDNVFKNMSNDSVM VGAVTAALGASALFGLQNENGIVETSAEYMNESGSPEMALDKLDDGMSENDQNNAVASFAEKAMSVAGPVVPTKGDGEVDEDRLVSMLAGLGQRGGILRV VGKVALLWGGLRAAMSLTDRLISFLDIADRPFYQRILGFVGMALVLWSPVVIPLLPTLVQGWTTGTPSRFAELISILGLYAAILLLVMKWASKIRGYEHP LKQYGLDFTTLPKIQSFLAGLGGGVGLVLLMQSVNVCLGYASFSWPASHPPSANLIEYLKVYGKMILFSVQGTITATAVVLVEELLFRSWLPGEIAADLG YHRGIIISGLVFALAQRSPLTVPALWLLSLALSGLRERSQGSLLTVIGLRAGMVVSSFVLQSRGVLTYKDTLPFWVTGTHPFQPFSGVIGLAFSLSMAVL LYPRQKLEDNWRNVGDIFGHMGKQEKGRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10034894 [exp]	0	1
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	9.8	0.8359
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	10.2	0.8108
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	14.1	0.8348
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	16.2	0.8177
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	18.2	0.8237
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	20.1	0.8147
AT2G42490			Copper amine oxidase family pr...		Lus10026696 [exp]	20.8	0.7980
AT4G32160			Phox (PX) domain-containing pr...		Lus10001495 [exp]	20.8	0.8089
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	24.4	0.8122
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	28.5	0.8094

Compare expression of checked genes

Lus10034894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.