Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60360 518 / 0 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G45310 513 / 0 Cysteine proteinases superfamily protein (.1.2) AT1G47128 203 / 1e-61 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 201 / 8e-61 Granulin repeat cysteine protease family protein (.1) AT1G09850 197 / 1e-59 XBCP3 xylem bark cysteine peptidase 3 (.1) AT1G06260 191 / 5e-58 Cysteine proteinases superfamily protein (.1) AT3G54940 191 / 9e-58 Papain family cysteine protease (.2) AT4G36880 190 / 3e-57 CP1 cysteine proteinase1 (.1) AT4G39090 189 / 3e-57 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT3G48340 189 / 5e-57 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033428 [exp] 639 / 0 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10020730 [exp] 198 / 1e-60 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020734 [exp] 196 / 5e-60 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 196 / 5e-60 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 196 / 7e-60 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 196 / 7e-60 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10042295 [exp] 195 / 1e-59 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10020723 [exp] 195 / 2e-59 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10026362 [exp] 194 / 2e-59 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141700 [exp] 529 / 0 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G232900 [exp] 201 / 4e-61 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.014G024100 [exp] 201 / 2e-60 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G076000 [exp] 194 / 4e-59 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.009G098100 [exp] 196 / 1e-58 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.007G075900 [exp] 193 / 1e-58 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 193 / 1e-58 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 193 / 1e-58 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 192 / 2e-58 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.001G302100 [exp] 194 / 5e-58 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10034895 pacid=23142245 polypeptide=Lus10034895 locus=Lus10034895.g ID=Lus10034895.BGIv1.0 annot-version=v1.0 ATGGTTCGCCCAGCGTTGATCTCCTCCGTCCTTCTCCTCCTCATATGCTGCGCCGCCGCCGTTGCCTTAGAGGACGACTTGAATCCCATCCGGATGGTCT CCGATCGTCTCAGCGAATTGGAAGCTTCTGTTGTCAAAGTCGTCGGCAACACTCGCTTGGCTCTTAAATTCGCTCGATTTGCTCACAGGCATGGGAAGAA GTATGAGATGGAGGAGGAGATAAGGCAGCGGTTCTCCATCTTCAAGGAGAATTATGATTTAATCAGATCCACCAATAGAAAGGGATTGCCTTACACCCTT GGTGTTAATTTTTATGCTGATTGGACATGGGAAGAGTTCCAAATGAAAAAGCTAGGAGCTGCTCAAAACTGCTCTGCCACCAGGAGGGGCAATTTAATGA TAACCGATGCTATCCTTCCGGAAAAGAAAGACTGGAGGGATGAAGGAATTGTGAGCCCAGTTAAGAATCAAGGCGGGTGTGGATCTTGTTGGACATTCAG CACGACTGGAGCTCTTGAAGCAGCTTATGCCCAAGCTTTTGGAAAAGGAATATCTTTCTATGGCTGCAATGGTGGACTCCCATCCCAAGCTTTTGAATAC ATAAAATACAATGGAGGTCTGGAAACCGAGGAAGCATACCCTTACACAGGAAAGAATGGGTTGTGCAAATACTCAGCGCAGAATATTGGTGTCCAAGTTT TGGACTCCGTAAACATCACATTGGGAGCAGAAGATGAGCTGAAGCAAGCAGTAGGGTTGGTTCGTCCAGTAAGTGTGGCATTCCAGGTGGTGTCTGATTT CCGATTATACAAGAGTGGGGTTTACACCAGTGAGACCTGTGGCAGTACTTCCATGGATGTGAACCATGCTGTTCTGGCTGTGGGATACGGAGTTGAAAAT AATGTTCCATATTGGCTGATCAAGAACTCCTGGGGAGGTGATTGGGGTGACAGTGGCTATTTCAAGATGGAAATGGGGAAGAACATGTGTGGTGTTGCAA CATGTGCTTCGTATCCGGTTGTTGCCTAA
AA sequence Show only first row Show all	>Lus10034895 pacid=23142245 polypeptide=Lus10034895 locus=Lus10034895.g ID=Lus10034895.BGIv1.0 annot-version=v1.0 MVRPALISSVLLLLICCAAAVALEDDLNPIRMVSDRLSELEASVVKVVGNTRLALKFARFAHRHGKKYEMEEEIRQRFSIFKENYDLIRSTNRKGLPYTL GVNFYADWTWEEFQMKKLGAAQNCSATRRGNLMITDAILPEKKDWRDEGIVSPVKNQGGCGSCWTFSTTGALEAAYAQAFGKGISFYGCNGGLPSQAFEY IKYNGGLETEEAYPYTGKNGLCKYSAQNIGVQVLDSVNITLGAEDELKQAVGLVRPVSVAFQVVSDFRLYKSGVYTSETCGSTSMDVNHAVLAVGYGVEN NVPYWLIKNSWGGDWGDSGYFKMEMGKNMCGVATCASYPVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	0	1
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	1.0	0.9627
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	2.2	0.9302
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	2.4	0.9265
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	3.5	0.9337
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	3.7	0.9154
AT1G04555			unknown protein		Lus10014458 [exp]	4.2	0.9350
AT5G11680			unknown protein		Lus10027000 [exp]	4.2	0.9236
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	4.9	0.9253
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	5.2	0.9344
AT1G04555			unknown protein		Lus10023715 [exp]	5.3	0.9259

Compare expression of checked genes

Lus10034895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.