Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008263 [exp] 39 / 0.0007 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034896 pacid=23142209 polypeptide=Lus10034896 locus=Lus10034896.g ID=Lus10034896.BGIv1.0 annot-version=v1.0 ATGGATAGTGGACGCTCTGGAGGAGGAAGCAGCGCCCGACCTCAATCGCCAAATAGGGTCCGCCCTGTCTCGGCCAACACTGGCTCCAAACTTGCAGGAG GAAAGGAAGCGCAGACGTCAATAGTTGCTTGGCGGGAGCACAAGCGCAATGGAAGGTGTGGAGCAGAGCTTCGAAAGTCCATCGAAGCAGATCAAGGGTA CCTAGGAACACCAAAAAACCTAGCAACAGTGTTGAAGGAGGGATGGGATCGATGTCAGCGGCGTATGCTTGCTCGGAGCAGGCTCGAGAGTTTTGTGTCG GGAACACAAATCGAGGAGAAGAGAGCAAGCGGCAGTGATTCTTGGAGGCCGCCGGAAAACCCTCTCTGGATTCTGGGTTTGGTTGCGTCGGCGAGCCCTT CTCCTGAGAAGGAGGGGGACCAAACTAGACTTCCCAAAAGATAA
AA sequence Show only first row Show all	>Lus10034896 pacid=23142209 polypeptide=Lus10034896 locus=Lus10034896.g ID=Lus10034896.BGIv1.0 annot-version=v1.0 MDSGRSGGGSSARPQSPNRVRPVSANTGSKLAGGKEAQTSIVAWREHKRNGRCGAELRKSIEADQGYLGTPKNLATVLKEGWDRCQRRMLARSRLESFVS GTQIEEKRASGSDSWRPPENPLWILGLVASASPSPEKEGDQTRLPKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034896 [exp]	0	1
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	8.6	0.7798
AT4G18180			Pectin lyase-like superfamily ...		Lus10016824 [exp]	9.5	0.6897
AT5G53045			unknown protein		Lus10017942 [exp]	12.6	0.8057
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	31.1	0.7137
AT2G28430			unknown protein		Lus10022580 [exp]	31.8	0.7079
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	73.1	0.6869
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	96.7	0.6759
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Lus10020394 [exp]	113.0	0.6467
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	115.1	0.6889
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000665 [exp]	119.0	0.6422

Compare expression of checked genes

Lus10034896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.