Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 587 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G35580 535 / 0 Protein kinase superfamily protein (.1) AT2G26290 462 / 1e-160 ARSK1 root-specific kinase 1 (.1) AT1G72540 460 / 3e-159 Protein kinase superfamily protein (.1) AT5G01020 451 / 3e-156 Protein kinase superfamily protein (.1) AT1G61590 447 / 1e-154 Protein kinase superfamily protein (.1) AT2G07180 406 / 4e-138 Protein kinase superfamily protein (.1.2) AT3G28690 401 / 4e-137 Protein kinase superfamily protein (.1.2.3) AT5G15080 403 / 2e-136 Protein kinase superfamily protein (.1) AT3G01300 395 / 4e-133 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033429 [exp] 811 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 508 / 2e-177 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 506 / 6e-177 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 492 / 9e-172 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 491 / 3e-171 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 446 / 8e-155 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 446 / 1e-153 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 445 / 5e-153 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 406 / 3e-137 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141500 [exp] 603 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 523 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 515 / 0 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 508 / 4e-178 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 470 / 2e-163 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 461 / 5e-160 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 458 / 8e-159 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 452 / 1e-156 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 408 / 2e-138 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 407 / 4e-138 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034897 pacid=23142266 polypeptide=Lus10034897 locus=Lus10034897.g ID=Lus10034897.BGIv1.0 annot-version=v1.0 ATGGCAACGGTGGAGAAATCTGGATGGGCTTCATTCTTCTCGAGCTGCTTCGGTTCCGAACCGGGCCAAACCAGTGTTAGCCAGAATGGGAAGAAGGACA AGAAGAGGAAAAAGCGGTCCAGCTCATCGTCCACGTCATCACCGAAAGCAAAGAACAAACAGGGGATGATGACGATGACGAGGCAGGGTTCGTTTCAAGG ACGGGTTTCGATATCAGATCTGAGTAATCCTAGCTCATCGCTGCTTTCAGAAGACCTATCCATTTCCCTTGCCGGCTCGAACCTCCACGTCTTCACCTTG GCCGAGCTTAAGATCATCACCCAGAGCTTCTCCTCCAGCAACTTCCTTGGCGAAGGCGGCTTCGGCCCTGTTCACAAGGGTTTCATCGACGACAAGCTCC GGCCTGGCGTCTTGAAAGCTCAGCCTGTCGCCGTTAAGCTCCTCGACCTCGAAGGCCTCCAGGGCCACCGGGAGTGGTTGACCGAGGTCATATTCCTTGG ACAACTAAGACACCCTCATCTCGTCAAACTCATCGGATACTGCTGCGAAGAGGAACACCGACTGTTGGTTTACGAGTACATGCCACGTGGCAGCCTCGAG CACCATCTCTTCCGACGATATTCGGCATCTCTACCTTGGTCAACGAGGATGAAAATAGCAGAAGGAGCTGCAAAGGGACTTCAATTCCTCCACGAATCGC AAAAGCCAGTCATATACAGAGACTTCAAAGCTTCCAACATTCTCTTGGACTCCGACTTCACCGCCAAACTGTCCGATTTTGGGCTGGCTAAAGACGGGCC GGAAGGATCCGACACCCATATTTCGACAAGAGTGATGGGGACCCATGGCTACGCTGCACCGGAATACATAATGACCGGCCATCTCACCTCGATGAGCGAT GTATACAGCTTTGGAGTCGTGTTACTAGAGCTCTTGTCGGGAAGGAGATCGGTCGACAAGGCTCGTCCTCCCAGGGAGCAGAATTTAGTAGAATGGGCCA GGCCCATGTTGAACGACCCGAGGAAACTGAGCCGGATAATGGACCCGAGGCTAGAGGGTCAATACTCGGAGACCGGTGCTCGAAAGGCGGCCGCATTGGC TTACCAGTGCTTGAGCCACCGCCCTAAGCATAGACCAACGATGAGCATGGTCGTTAAAACGCTGGCCCCACTCAAGGACTATAATGATTTCGCTATGGGT ACTTTCGTCTACGTGGTACCCACCACCACTGCGGAAAACAAAAAGGAATTAGGTGGTGAAGAGAAGCTTCCGGCGGAAAGTGAAGAAGTCAAAGTAAAGG CAGCTAAGAAGAAGGAACGAGGAAGCAGCTTGCAGCAGGGTGGTGGCAATAATATAAATGTTGTTGGCCAGCAGCAATATCATCATAAACATAAGCTTCA CCACGGTGGTGACGGCGAGAGGAAGCATCACCGGAGTTCTCCGAGGTCTCCAACTGTTCACTCCGATGCTGGGTATCGACACAGTCCCAGATCAAATAGG TTGAACTCTCCGTTGCATCCAAAAGCCAATAGTGCCTGA
AA sequence Show only first row Show all	>Lus10034897 pacid=23142266 polypeptide=Lus10034897 locus=Lus10034897.g ID=Lus10034897.BGIv1.0 annot-version=v1.0 MATVEKSGWASFFSSCFGSEPGQTSVSQNGKKDKKRKKRSSSSSTSSPKAKNKQGMMTMTRQGSFQGRVSISDLSNPSSSLLSEDLSISLAGSNLHVFTL AELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGVLKAQPVAVKLLDLEGLQGHREWLTEVIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMPRGSLE HHLFRRYSASLPWSTRMKIAEGAAKGLQFLHESQKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGSDTHISTRVMGTHGYAAPEYIMTGHLTSMSD VYSFGVVLLELLSGRRSVDKARPPREQNLVEWARPMLNDPRKLSRIMDPRLEGQYSETGARKAAALAYQCLSHRPKHRPTMSMVVKTLAPLKDYNDFAMG TFVYVVPTTTAENKKELGGEEKLPAESEEVKVKAAKKKERGSSLQQGGGNNINVVGQQQYHHKHKLHHGGDGERKHHRSSPRSPTVHSDAGYRHSPRSNR LNSPLHPKANSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	0	1
					Lus10039778 [exp]	1.4	0.9060
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	2.0	0.9116
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	3.5	0.8755
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	5.7	0.8967
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	8.4	0.8053
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	8.5	0.8526
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	8.7	0.8713
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	8.9	0.8469
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	9.0	0.8548
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	11.0	0.8582

Compare expression of checked genes

Lus10034897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.