Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05920 1072 / 0 Subtilase family protein (.1) AT5G67360 803 / 0 ARA12 Subtilase family protein (.1) AT3G14067 752 / 0 Subtilase family protein (.1) AT5G51750 728 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 721 / 0 Subtilase family protein (.1) AT4G34980 713 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 648 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 587 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 560 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 553 / 0 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033431 [exp] 1447 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 762 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 761 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 753 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 741 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 706 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 697 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 682 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 640 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141200 [exp] 1181 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 770 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 764 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.002G120400 [exp] 756 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 754 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 742 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G167300 [exp] 736 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 736 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 730 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 729 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10034900 pacid=23142267 polypeptide=Lus10034900 locus=Lus10034900.g ID=Lus10034900.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAGGCATGCAGATGCCTCTTACCACTTCTACTTCTTCTTTCAACACTCTCGCTTTCCGCCATTGCCAAGCAGACGTACATTGTCCACATTA AGCACAATTCCAAGCCCCAATCCTTCGTCACCCACCGTGATTGGTACTCTGCTAGCCTCCTCTCCATCGATGCCGCCGATCCATCCCTTCTCTACACCTA TGATGCCGCATTTCACGGATTCGCTGCCTCCCTCGAACCGGAGCAGGCTGATGCACTACGGAAGTCCGATTATGTCGTCGATGTGTACGAAGAGACGGTC TACTCTCTCCACACCACTCGTACTCCTCAGTTCCTCGGCATCAGTGACAACTTCGGCTTGTTCGATGGCCACCGGGTTTTTGATGTCGATCAGGCTTCTA ATTACGATGTCGTCGTCGGAGTCCTAGACACCGGTGTCTGGCCCGAGTCCAAAAGCTACGATGACTCCGGTATGCCCGAGATCCCGGCCCGGTGGAAAGG CACGTGTGAGTCCGGGCCGGATTTCAGCCCCAAACTCTGCAACAAGAAGCTTATCGGCGCCCGTTACTTTTCCAAGGGATTCCACATGGCTTCCGGTGGA AGCTTCGCTAAGCGTCCTACCATCAAAGAGGAGGAATCCCCACGAGACAGAGATGGTCACGGCACGCACACCTCCAGTACTGCTGCAGGTTCCATGGTGG CTAACGCAAGTCTGCTAGGCTACGCCAGCGGCACGGCGCGTGGGATGGTTACGCATGCGCGCGTGGCGGCTTACAAGGTGTGCTGGAGTTCCGGTTGCTT CGGATCTGACATCCTCGCCGGTATGGATAGGGCGATTCAGGACGGCGTCGACGTTCTTTCTCTCTCCCTCGGTGGAGGATCCGCTCCGTATTACCGTGAT ACCATCGCGATTGGGGCGTTCAGTGCGATGGAGAGGGGTATTTTCGTCTCTTGCTCCGCTGGTAACAGTGGGCCAACGAGGGCTAGTCTTGCCAACGTGG CTCCATGGATTATGACGGTTGGGGCCGGGACGCTGGACCGGGATTTCCCTGCTTTTGCGATTCTGGGTAACGGGAAGCGGATCACTGGGGTTTCGCTCTA CAGTGGAGCCGGAATGGGTAAGAAACTTGTGAGTTTGGTTTATAACAAGGGAAGTAACAGTTCGAGCAATTTGTGTCTGCCCGGTTCGCTCGAGCCGGCG TTGGTTAAGGGGAAAGTGGTTGTCTGCGATAGGGGAATAAACGCGCGCGTGGAGAAAGGTGCGGTTGTGCGGGACGCAGGTGCGATGGGGATGATACTGG CGAATACAGCTGCAAGCGGGGAGGAATTAGTGGCCGATAGTCACTTGCTGCCGGCGGTGGCGGTGGGGAGGAAATTGGGTGATGTGATAAAGGAGTACGC GAGGAGCGTATCGAATCCAAAAGCGGTGTTGAGCTTCGGAGGAACGGAGGTGAATGTGAAGCCGTCGCCGGTGGTGGCAGCATTCAGCTCAAGGGGGCCG AATATGGTCACAGCGCAGATTTTGAAGCCGGATCTGATTGGCCCCGGTGTGAACATCTTAGCGGCATGGTCGGAAGCTATTGGACCTACAGGCTTAGACA AGGATTCCAGAAAGACACAGTTCAACATTATGTCAGGAACATCAATGTCGTGCCCACATATCAGCGGTGTGGCTGCATTGCTTAAAGCTGCTCACCCTAC CTGGAGCCCAAGTGCCATAAAATCTGCACTCATGACAACTTCCTATGTTGTCGACAACACCAACTCCCCTCTCAAGGATGCTACCGATGGGTCGCTTTCA ACCCCATGGGCTCACGGTTCAGGTCACGTGGACCCTCACAAGGCTCTATCTCCGGGCCTTGTCTACGACATCTCCACCGAGGAGTACATTGCATTCTTGT GCTCCCTAGACTACACAATCGACCGTGTCCAGGCCATTGTGAAGCGTCCTAACATCACTTGTTCGAGGAAGTTCAAGGACCCCGGCAGCCTCAACTATCC ATCTTTCTCAGTTGTTTTTGCTAGAACCAGGGTCATCCGGTACACCCGGGAGCTCACTAATGTGGGCGCTCCCGATTCTACATACGAGGTGGTTGTAACC ACTCCTCGATCGGTGACTGCAACGGTGAAGCCTACGAAGCTTGTTTTCAAGAAAGTAGGGGACAAGCTGAGGTACACGGTGACTTTTGTGTCCAAGAACA GAGGAGGGAATGCAATGTCGGAGTTTGGTTCTATAGTTTGGAAAAATGATGAGCACCAAGTGAGGAGCCCTGTTGCATTTTCATGGTCAGAGTTGTAA
AA sequence Show only first row Show all	>Lus10034900 pacid=23142267 polypeptide=Lus10034900 locus=Lus10034900.g ID=Lus10034900.BGIv1.0 annot-version=v1.0 MASKACRCLLPLLLLLSTLSLSAIAKQTYIVHIKHNSKPQSFVTHRDWYSASLLSIDAADPSLLYTYDAAFHGFAASLEPEQADALRKSDYVVDVYEETV YSLHTTRTPQFLGISDNFGLFDGHRVFDVDQASNYDVVVGVLDTGVWPESKSYDDSGMPEIPARWKGTCESGPDFSPKLCNKKLIGARYFSKGFHMASGG SFAKRPTIKEEESPRDRDGHGTHTSSTAAGSMVANASLLGYASGTARGMVTHARVAAYKVCWSSGCFGSDILAGMDRAIQDGVDVLSLSLGGGSAPYYRD TIAIGAFSAMERGIFVSCSAGNSGPTRASLANVAPWIMTVGAGTLDRDFPAFAILGNGKRITGVSLYSGAGMGKKLVSLVYNKGSNSSSNLCLPGSLEPA LVKGKVVVCDRGINARVEKGAVVRDAGAMGMILANTAASGEELVADSHLLPAVAVGRKLGDVIKEYARSVSNPKAVLSFGGTEVNVKPSPVVAAFSSRGP NMVTAQILKPDLIGPGVNILAAWSEAIGPTGLDKDSRKTQFNIMSGTSMSCPHISGVAALLKAAHPTWSPSAIKSALMTTSYVVDNTNSPLKDATDGSLS TPWAHGSGHVDPHKALSPGLVYDISTEEYIAFLCSLDYTIDRVQAIVKRPNITCSRKFKDPGSLNYPSFSVVFARTRVIRYTRELTNVGAPDSTYEVVVT TPRSVTATVKPTKLVFKKVGDKLRYTVTFVSKNRGGNAMSEFGSIVWKNDEHQVRSPVAFSWSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	0	1
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	1.0	0.9381
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	4.0	0.8901
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	4.7	0.9024
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	5.1	0.8800
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	7.5	0.8816
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	9.2	0.8872
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	11.4	0.8543
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	15.0	0.8487
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	15.5	0.8495
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	15.6	0.8812

Compare expression of checked genes

Lus10034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.