Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45130 255 / 6e-87 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT4G19640 250 / 3e-85 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT3G54840 201 / 1e-65 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G35860 155 / 1e-47 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT2G22290 154 / 4e-47 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT4G39890 154 / 6e-47 AtRABH1c RAB GTPase homolog H1C (.1) AT2G44610 152 / 2e-46 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G10260 152 / 2e-46 AtRABH1e RAB GTPase homolog H1E (.1) AT1G06400 151 / 7e-46 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G16920 151 / 7e-46 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038334 [exp] 240 / 6e-81 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10040625 [exp] 231 / 2e-77 AT5G45130 355 / 6e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10018285 [exp] 228 / 4e-76 AT5G45130 359 / 3e-128 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10028820 [exp] 205 / 3e-67 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 199 / 7e-63 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10036196 [exp] 170 / 1e-54 AT5G45130 214 / 2e-72 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10036198 [exp] 171 / 2e-54 AT4G19640 216 / 8e-73 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Lus10014336 [exp] 155 / 2e-47 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10041702 [exp] 154 / 6e-47 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079300 [exp] 290 / 6e-101 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G054900 [exp] 276 / 2e-95 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Potri.015G113000 [exp] 251 / 2e-85 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.012G117800 [exp] 250 / 6e-85 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.010G226300 [exp] 200 / 3e-65 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 200 / 3e-65 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.005G075300 [exp] 155 / 2e-47 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.003G086700 [exp] 154 / 2e-47 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.009G159600 [exp] 154 / 6e-47 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.002G135500 [exp] 151 / 4e-46 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10034903 pacid=23181429 polypeptide=Lus10034903 locus=Lus10034903.g ID=Lus10034903.BGIv1.0 annot-version=v1.0 ATGAGAGGCAACAAGATCATACAAGCCAAGCTGGTAGTTCTTGGGGACATGGGGACTGGAAAGACAAGTTTGGTGCTACGATTCGTCAAGGGCCAGTTCC ATGATTATCAGGAATCAACGATAGGGGCAGCATTTTTCACAGAGGTGTTGACAGTGAAAGAAGCAACCATTAAATTTGATATATGGGACACTGCCGGCCA GGAAAGATACCATAGCTTAGCACCTATGTACTACCGTGGAGCTTCTGCTGCTGTTGTGCTTTATGATATCACTAACAAGGACTCGTTTGTTCGAGCTAAA AAATGGGTTCTGGAATTACAACGGCAAGAGAAGCCAAATTTGGTGGTGTTCTTGGTGGGGAACAAGGCGGATTTGGAAGAGAAGAGGCAAGTTGGAACTG AGGAAGGTGAGGCATATGCTGAAGAAAATGGGCTGGATTTCCTCGAGACGTCTGCGAAAAATGACGAGAATGTGAAGGAACTATTCTATGAGATAGCAAA CAGAGTAGCAAAGGTTGTACCTTCAGGTCCAAGTGGAATTAGACTGAGCAACACAAGAGGGTCAGGAGAAGTAGGGATCCTCAGCAGTAGCAGCAGCAGG AGGTTGTTCTTTTGCTGCTCCTCTTAA
AA sequence Show only first row Show all	>Lus10034903 pacid=23181429 polypeptide=Lus10034903 locus=Lus10034903.g ID=Lus10034903.BGIv1.0 annot-version=v1.0 MRGNKIIQAKLVVLGDMGTGKTSLVLRFVKGQFHDYQESTIGAAFFTEVLTVKEATIKFDIWDTAGQERYHSLAPMYYRGASAAVVLYDITNKDSFVRAK KWVLELQRQEKPNLVVFLVGNKADLEEKRQVGTEEGEAYAEENGLDFLETSAKNDENVKELFYEIANRVAKVVPSGPSGIRLSNTRGSGEVGILSSSSSR RLFFCCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10034903 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10035232 [exp]	1.0	0.9564
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	8.7	0.8788
AT5G13660			unknown protein		Lus10005963 [exp]	11.0	0.8722
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	12.6	0.8722
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	14.1	0.8722
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	15.1	0.7697
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	15.5	0.8722
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	16.6	0.8122
					Lus10006164 [exp]	16.7	0.8722
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10017306 [exp]	17.0	0.8646

Compare expression of checked genes

Lus10034903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.