Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29300 52 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023634 [exp] 321 / 1e-109 AT3G29300 52 / 7e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079400 [exp] 133 / 9e-37 AT3G29300 69 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034904 pacid=23181393 polypeptide=Lus10034904 locus=Lus10034904.g ID=Lus10034904.BGIv1.0 annot-version=v1.0 ATGAAGGGAGCTTCCAAAGTGATCATGGGAGCCACCGTGGTGATGGTTGTAAGCCTAGCAGTTGTACTTTCCCTAGTCCTAGTCCTCCTAGCTGAGCTCT ACTGCAACCTCATTCTCCGCCGCCGTCAGCAACGACTCGAGGCGGCTTCCTCCCTCATAGACACCCCCATCACCACCGCCGCCACGACTCCCACCACCCT CACCGCTGCCGCCGCCATTTCCTCCTCGTCCCCTTCCGACTTACCGTTCACAGCTCCTCCTGGAGTCCTCCAAGCTCCCAGAAGCTTCCTCTTCCCGGCC ACTAAAGAAGCTTCTAAGCATTTCACCACCACCAACCGGAGTCACCAATCTCTGCATCACGTGCTGGAGCTCTACTCCCCACGTGACGACTCCTCTTCGC CGAACGCTACAGCCAGCCCGCAACAAATCGGCCTCCTACGGACTCCTCCGCCTCCGGCTTCCTACCTCTCTTCCCCTCAAGAAATCAGAGATATCTCAGC CGTACAGGTATCCTCTCCATCCCCGTCATCCGCCCTCCATAAGGAGGCTACCAACGACAAGAAAGAGCAGCAGCATTTCATCTACATATCAAATCCCATC TATGACAACAATAGCAGGATTAGCTGCAATGGGGGAGGAGACACCCCGTTCGAAACCCCGGACACTTCTCCGTCCCGTTTCGAGGAGAGCTGTAGTAGCG GCAGCGATGATGAAGTAGCTCAGGGAGTAGTGAGGAACAATAATAGCGAATCACCGCTACTACTACTAGCTCATACCAACAATAGTATTACTATTACACC TCCGTTAACTCCGATGAAGAAGCTGCCAGCTGAAGCTTCATCGGTATCGTTGAGGGACGCGAGGTCGTTGGGTACTTCGGGGAGTGATTCGGTGAGCAAT GTGAATGTGATGTCTTCTTCCTCATCTGGCACACCTTGCACTTCTCCTTCTTGGTGA
AA sequence Show only first row Show all	>Lus10034904 pacid=23181393 polypeptide=Lus10034904 locus=Lus10034904.g ID=Lus10034904.BGIv1.0 annot-version=v1.0 MKGASKVIMGATVVMVVSLAVVLSLVLVLLAELYCNLILRRRQQRLEAASSLIDTPITTAATTPTTLTAAAAISSSSPSDLPFTAPPGVLQAPRSFLFPA TKEASKHFTTTNRSHQSLHHVLELYSPRDDSSSPNATASPQQIGLLRTPPPPASYLSSPQEIRDISAVQVSSPSPSSALHKEATNDKKEQQHFIYISNPI YDNNSRISCNGGGDTPFETPDTSPSRFEESCSSGSDDEVAQGVVRNNNSESPLLLLAHTNNSITITPPLTPMKKLPAEASSVSLRDARSLGTSGSDSVSN VNVMSSSSSGTPCTSPSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29300			unknown protein		Lus10034904 [exp]	0	1
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	2.0	0.9743
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	4.2	0.9724
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	4.6	0.9719
AT3G29300			unknown protein		Lus10023634 [exp]	4.6	0.9540
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10017669 [exp]	4.7	0.9530
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	5.5	0.9655
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	6.9	0.9680
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	7.4	0.9574
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	9.9	0.9605
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023591 [exp]	11.3	0.9092

Compare expression of checked genes

Lus10034904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.