Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32350 255 / 5e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 218 / 1e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 154 / 1e-41 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 133 / 4e-33 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 130 / 2e-31 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 115 / 3e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 111 / 4e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 105 / 6e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 97 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 99 / 3e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023635 [exp] 1128 / 0 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10011455 [exp] 202 / 9e-59 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 203 / 1e-55 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10035885 [exp] 188 / 2e-52 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 168 / 3e-46 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 165 / 1e-43 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 127 / 6e-31 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 125 / 3e-30 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 122 / 1e-29 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079500 [exp] 511 / 3e-174 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.001G181300 [exp] 211 / 2e-60 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 197 / 2e-55 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 143 / 1e-36 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 142 / 4e-36 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 132 / 2e-32 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 126 / 5e-32 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 126 / 1e-30 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 124 / 9e-30 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 125 / 2e-29 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10034905 pacid=23181397 polypeptide=Lus10034905 locus=Lus10034905.g ID=Lus10034905.BGIv1.0 annot-version=v1.0 ATGCTGGACGGACTATTAGGTCGAGGCTTTGCTACGAAATGCAAATCACTGATAAAACAGACCAAGAGTAGGATCGACGTGATTCGGAGAAAGAGAAGCG CTACTCTAAAGTTTCTAAAGAAAGATGTAGCCGATCTGCTCACCAATGGACTCGAAATCAACGCTTATGGCAGGGCTGAAGGACTTGTGGCCGAGTTGAT CTTATCCTCTTGCTATGATTTTGTTGAGCGCTGCTGTGATCTTGTGCTGAAGCATCTATCCGTCTTGCAAAAGATGAGACATTGCCCCGAGGACTGCAGG GAGGCCGTATCATCCATAATGTTTGCTGCAGCAAGATTCTCCGATCTACCTGAATTACGAGATCTTAGGCAACTATTTCTTGAGAGATATGGTGATTCCT TGGAACTCTTTGTGAATCAAGGGTTTGTCAACAACATGTCTGTTAAACCTGTCACGACGGAGAAGAAAATTCAACTATTGCAAGATATTGCATCAGAGTT CTCTATCAGATGGGACTCCAGGGGTTTTGAACAGAGGATATCCAGACCAACTCCAGTGCAGGAGCAACCTAAAACTTATCCTTCCCCCCTTGCTAGTGAT AGCAATTCTACCTTAACCGGTGTGAAGGACAGCATTCCTCAAGAGGCTAAACGTGATCTCCCATCTAAAGAAAGGCGAGAAGAGAAAAAGCATGGCTTTG TGTTGATCAATGAAGAGAAAAATGTCTGGAAAAAGGATGAGCTGAATCCCCGTTCAAGGAATCAAGGTTCCAATCATGTCAACAAATGGCAGAACGGAGG AGAAAAAGAAACTACTCAGAGACATAATAAGTATGAGTTGTTGTCTCCTCCTACAAGGCAAGAAGTTCATGTTGTGAAGAAGCATGAACCTATAAAGGAT AATCCTCTTCTGAAAACAGCGAGTTCAAGCGCTTCATCTCAGCGGAAACTACATGCAAGTAAGCTGTATAAAGTTGATCTCGTAAATGATAGGATTCACG GAAAACAACCTTCTCCTAGTAATTTTGGACAACGGTCAAATGGCAACGGCAAAGCTCCATTGGCTGGCAATGTGTATGTTGGCAGCAAATACACTGCTGA AAAATCTACGCAAGCTGCACAGGAAGAAGAAGCACAGAAGTTGAGATCTTTCTACAACAGTGCCATACCGCCTCCTTACACAAGACCAAATACTAAGTTG AAGGACAGCAAGTCTGCAGTTAATGTAGGATATGCAAATACAGTTTCAGATGGCGATGCAATCGACACATCGAGGGCCCAGGGGATCAATCATGGTTATC GGTCTGAAAACAATGGTACAAGATCGCATCATCCTGACCGTGTGGGACTAGAAAGAGGTGATGAACATGTGTTTGACACCAAGGTTTATTACCAGGGTGA TACTACTACTGCTGCAGCCAACCCCATCCTGAAACCACGATCTTCCAGGAGACGACACCAAAAGTCACAAATCAGTCATCATGACAATGACAGTACCGTG GAATCTGCTGGAGTTGTTAAGAAGAAAACAAGGAGCAGCAGGAGAAAGGACGACTCAAGGCGGGGCCTGCAAATCTTGTTCGACGATGAGCAAGAGAAGA GTGACGAAGAGGAAAGGATAATAGATAAACTGCTGGTCCACTACAGCAAGAAACCATCCACATACGAGGCCGAACCTGGAAAAATCATTAGAAAGAAGTC GAGGAGTCATCATCATTCCAGTCACCCCAGCACAGACAAATCTCCATCTCAAATTGGTAGAGATGATGATGGTGAAACCTCAGCCTCTGTACATTCTCAT CCGTCCAGATCATTTTCCCTCCCCAGCGAACAACCATCGTCAATCCAGCCACCCCAGCAAAACAAAGTGTTCACTCGTGCAGCTTCCTTTGAGCCAGATA GGTCTTCAGCAGCTGCTCGACACGTCCATCCAAAGCTACCTGACTACGAGGACTTGGCTGCACGATTTGCTGCCTTGAAAGGGAGGTAA
AA sequence Show only first row Show all	>Lus10034905 pacid=23181397 polypeptide=Lus10034905 locus=Lus10034905.g ID=Lus10034905.BGIv1.0 annot-version=v1.0 MLDGLLGRGFATKCKSLIKQTKSRIDVIRRKRSATLKFLKKDVADLLTNGLEINAYGRAEGLVAELILSSCYDFVERCCDLVLKHLSVLQKMRHCPEDCR EAVSSIMFAAARFSDLPELRDLRQLFLERYGDSLELFVNQGFVNNMSVKPVTTEKKIQLLQDIASEFSIRWDSRGFEQRISRPTPVQEQPKTYPSPLASD SNSTLTGVKDSIPQEAKRDLPSKERREEKKHGFVLINEEKNVWKKDELNPRSRNQGSNHVNKWQNGGEKETTQRHNKYELLSPPTRQEVHVVKKHEPIKD NPLLKTASSSASSQRKLHASKLYKVDLVNDRIHGKQPSPSNFGQRSNGNGKAPLAGNVYVGSKYTAEKSTQAAQEEEAQKLRSFYNSAIPPPYTRPNTKL KDSKSAVNVGYANTVSDGDAIDTSRAQGINHGYRSENNGTRSHHPDRVGLERGDEHVFDTKVYYQGDTTTAAANPILKPRSSRRRHQKSQISHHDNDSTV ESAGVVKKKTRSSRRKDDSRRGLQILFDDEQEKSDEEERIIDKLLVHYSKKPSTYEAEPGKIIRKKSRSHHHSSHPSTDKSPSQIGRDDDGETSASVHSH PSRSFSLPSEQPSSIQPPQQNKVFTRAASFEPDRSSAAARHVHPKLPDYEDLAARFAALKGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32350			Regulator of Vps4 activity in ...		Lus10034905 [exp]	0	1
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10037710 [exp]	2.0	0.8666
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10008849 [exp]	4.6	0.8467
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	5.5	0.8816
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10019695 [exp]	8.4	0.8493
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	10.4	0.8543
AT5G19420			Regulator of chromosome conden...		Lus10016335 [exp]	11.8	0.8190
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	18.2	0.8357
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	19.5	0.8195
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	20.3	0.8506
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022472 [exp]	20.7	0.7775

Compare expression of checked genes

Lus10034905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.