Gene [FLAX] | FIBexDB

Lus10034906 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10014865 [exp]	124 / 1e-34	ND	/
Lus10022968 [exp]	130 / 3e-34	AT1G10790	214 / 8e-63	unknown protein
Lus10006254 [exp]	120 / 1e-33	ND	/
Lus10010383 [exp]	94 / 2e-24	ND	/
Lus10019586 [exp]	94 / 7e-24	ND	/
Lus10013091 [exp]	87 / 7e-22	ND	/
Lus10038712 [exp]	87 / 1e-21	ND	/
Lus10025361 [exp]	93 / 2e-21	AT2G14740	454 / 2e-155	VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Lus10042578 [exp]	89 / 2e-21	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10034906 pacid=23181365 polypeptide=Lus10034906 locus=Lus10034906.g ID=Lus10034906.BGIv1.0 annot-version=v1.0

ATGACGAGACAGACCGCGACATCCTCAGCAGGGCGGTACAGACGATTTTTGATAAAGGTGGGCCTGTTCTACGTTTTGACTAAATTGGTTTGTGCCCAAT

ACCAACCAGAATCAGACGGCGTGAAAGAGCCTAAGAAATCTGAGGCACCCAAGGGTAGGCCTCGTGCACATAAGAAAGATGGGCGGAACACTTCTTACCA

CAAGCATGCGAGTGCTCATTGTATCCCGACCAAGGGCAAAACCAACGACGGGTTTAGGTGTGTGTCCCACTCTATCAACGACGGTGACAAACATCAATAT

GTGGCTATGTGTCAGGAGCTTATGGACCACGTCCATGTGTACTGGGACGCTGGTATCACAAGGTCAGTTCTGTCGTGGCTCTATCGGGAGCTCGGTCGTT

CAGCGTTTAGGTTGGAGTATGCTGCTAGGAAGGGGATCAGTGACATTGGTGGTTGGACAATGCTGCTTACAGCTTGGGCCATTGATCCACTGAACCAGGC

GGCTGTCCTCCCGATCAGATGCGCCCGACGCCGGAGGACCCACGAGTCTGATTTCGTACCGCGACCATACATACCTTATTTGTCTGGCGCTCGCGCCCCG

CAGTACCATCCGGCGATGGAGCCGCAACAGGGGTCCCAGCCACCTTCGTCACACAGTGGTCCTAGCCACCTCCACCACATCAGTGGTTCCCCCAAATGGG

TCATGATGGAGCCAGCAGCTCACACCCACCGTGGGCCGGTGAGACACAACACCTGGAGTCTCAATTAG

AA sequence

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>Lus10034906 pacid=23181365 polypeptide=Lus10034906 locus=Lus10034906.g ID=Lus10034906.BGIv1.0 annot-version=v1.0

MTRQTATSSAGRYRRFLIKVGLFYVLTKLVCAQYQPESDGVKEPKKSEAPKGRPRAHKKDGRNTSYHKHASAHCIPTKGKTNDGFRCVSHSINDGDKHQY

VAMCQELMDHVHVYWDAGITRSVLSWLYRELGRSAFRLEYAARKGISDIGGWTMLLTAWAIDPLNQAAVLPIRCARRRRTHESDFVPRPYIPYLSGARAP

QYHPAMEPQQGSQPPSSHSGPSHLHHISGSPKWVMMEPAAHTHRGPVRHNTWSLN

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034906 [exp]	0	1

Lus10034906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.