Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24520 251 / 7e-82 HSF AT-HSFC1 heat shock transcription factor C1 (.1) AT1G32330 170 / 4e-49 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT2G26150 166 / 6e-49 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G51910 162 / 2e-48 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G16820 167 / 7e-48 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G17750 166 / 1e-47 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G03720 164 / 2e-47 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G02990 165 / 3e-47 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 157 / 5e-45 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT1G67970 152 / 2e-43 HSF AT-HSFA8 heat shock transcription factor A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023636 [exp] 467 / 2e-167 AT4G17750 254 / 4e-83 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) Lus10000312 [exp] 179 / 9e-53 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 179 / 2e-52 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040091 [exp] 176 / 2e-51 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 176 / 3e-51 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10013797 [exp] 164 / 3e-48 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10029269 [exp] 162 / 3e-48 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10040911 [exp] 164 / 4e-47 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10007318 [exp] 162 / 8e-47 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079901 [exp] 282 / 3e-94 AT3G24520 246 / 1e-79 heat shock transcription factor C1 (.1) Potri.001G138900 [exp] 177 / 1e-51 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 176 / 3e-51 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.002G048200 [exp] 169 / 9e-50 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.004G062300 [exp] 169 / 2e-49 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.005G214800 [exp] 165 / 2e-48 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 162 / 2e-47 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.011G071700 [exp] 163 / 4e-47 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 161 / 5e-46 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.010G082000 [exp] 158 / 9e-46 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10034907 pacid=23181360 polypeptide=Lus10034907 locus=Lus10034907.g ID=Lus10034907.BGIv1.0 annot-version=v1.0 ATGGAGGATAACACCTGCAGCCACAGTGGTAACGACGACAACAACAACGTCATCGCCCCCTTCGTTATGAAGACTTATCAGATGGTCAACGACCCATCGA CGGACAGCCTTATCTCTTGGGGGAAAGCCAACAACAGCTTCATTGTCGTCGACCCGTTGGATTTCTCTCGGAGGATCCTCCCAGTTTACTTCAAACACAA CAATTTCTCCAGCTTCGTCCGCCAGCTTAATACTTATGGGTTCAGGAAAGTGGATCCGGACAACTGGGAGTTCGCCAGCGAGTGGTTTCTGCGGGGGCAG AAGCAATTGTTGAGGAACGTAGTGAGGCGGCCGAAGCAATTGTGCAAATCTGGTTCAAGATCGTTGCATTCGATTGAGGATCTGGTGGATAGCAACGAAG AGATGGCGGTCGAAATCGGGAGGATGAAGCAGGACCAGAGAGCGTTGGAGAAGCAGATCGAAGGGATGAGCAAGCGATTGGAGGCGACGGAGCGGCGGCC GGAGCAGATGATGGCGTTCTTATACAAGGTCGTCGATGACCCGGACCTCTTGCCCCGGATGATGACGACTCGCCGCAAGCTCGATCACAGGAAAAAGCGG TGCCTGATGGCGTTGGTTTCTTCGGAGAATTCTTCGTCGCCGTCGACGTCGACGTCCGGCATGGCGACGACCTCGGCTCAGGGGTCGATCAAGTCGGAGG AGGAAATTTATATGCCGTCGCCGGAGAATGGGTTCGGGCGAGTGCAGTCGTCTTCGCCGGAGAGGTCGCCGGAGCAGCATGGATGGTTTATTGGAGAGAT CAGCAGCGGTAGGTTTGGCGATGGAGGAGGTGGGGGGAAAAGCTATGATTACGGAGGAACGACGGTGGAATCCAGGGCGGCGGGTCCGGGTTATCCATTC TCGGTTTTTGGGGGTGGATTTTAG
AA sequence Show only first row Show all	>Lus10034907 pacid=23181360 polypeptide=Lus10034907 locus=Lus10034907.g ID=Lus10034907.BGIv1.0 annot-version=v1.0 MEDNTCSHSGNDDNNNVIAPFVMKTYQMVNDPSTDSLISWGKANNSFIVVDPLDFSRRILPVYFKHNNFSSFVRQLNTYGFRKVDPDNWEFASEWFLRGQ KQLLRNVVRRPKQLCKSGSRSLHSIEDLVDSNEEMAVEIGRMKQDQRALEKQIEGMSKRLEATERRPEQMMAFLYKVVDDPDLLPRMMTTRRKLDHRKKR CLMALVSSENSSSPSTSTSGMATTSAQGSIKSEEEIYMPSPENGFGRVQSSSPERSPEQHGWFIGEISSGRFGDGGGGGKSYDYGGTTVESRAAGPGYPF SVFGGGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24520	HSF	AT-HSFC1	heat shock transcription facto...		Lus10034907 [exp]	0	1
AT2G28310			Protein of unknown function (D...		Lus10041316 [exp]	8.5	0.6890
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	11.2	0.7565
AT2G46200			unknown protein		Lus10021211 [exp]	19.2	0.7319
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	27.7	0.7300
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	28.9	0.6890
					Lus10003879 [exp]	31.8	0.7277
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10023446 [exp]	35.4	0.7267
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	38.7	0.7270
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10042384 [exp]	40.1	0.7183
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	40.2	0.6812

Compare expression of checked genes

Lus10034907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.