Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25620 290 / 1e-97 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 288 / 6e-97 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G11320 247 / 5e-81 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 236 / 2e-76 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G04610 235 / 4e-76 YUC3 YUCCA 3 (.1) AT1G04180 219 / 5e-70 YUC9 YUCCA 9 (.1) AT2G33230 218 / 2e-69 YUC7 YUCCA 7 (.1) AT5G43890 217 / 3e-69 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G28720 211 / 6e-67 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G21430 166 / 7e-50 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023637 [exp] 403 / 1e-142 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 336 / 1e-115 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10024023 [exp] 258 / 2e-85 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10041729 [exp] 256 / 6e-84 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10007671 [exp] 255 / 1e-83 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 252 / 7e-83 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 251 / 1e-82 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10035244 [exp] 232 / 6e-75 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 232 / 8e-75 AT1G04610 692 / 0.0 YUCCA 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243400 [exp] 299 / 3e-101 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 295 / 1e-99 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 265 / 4e-88 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 257 / 4e-85 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 237 / 6e-77 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.018G033200 [exp] 236 / 1e-76 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 228 / 3e-73 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.010G062400 [exp] 219 / 8e-69 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.005G111800 [exp] 167 / 5e-50 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.005G186100 [exp] 166 / 5e-50 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034908 pacid=23181342 polypeptide=Lus10034908 locus=Lus10034908.g ID=Lus10034908.BGIv1.0 annot-version=v1.0 ATGGAGGTCTGCTTGGACCTCTGCAATTACAAGGCTCACACTTCTCTAGTTGTTAGAGACTCGGTGCATGTCTTGCCGCAGCAGATGCTAGGGACATCAA CTTTTGGACTGTCAATGTGGTTGCTCAAGTGGTTCCCGGTTCCCGTCGTGGATCGGTTCTTGCTCTTGGTCTCTCTTTGCATGCTCGGCGACACTTCCCG ACTTGGGTTGACTCGACCCAAAATCGGCCCCTTGGAGCTAAAAAACCTCACTGGGAAAACCCCGGTTTTGGACGTTGGTACCCTTTCAAAGATTAGACGC GGTCAAATTAAGGTTCAACGAGGGATCAAGAAGATAACACAACAAATGGTGGAGTTTGTCGACGGGAGATTTGAATATTTTGATTGCATAATCCTTGCTA CTGGCTACAAAAGCAACGTCCCATCATGGCTTAAGGGGACGGAGATGTTTTCGGAGAAAGATGGGTTGCCGAGGAAAGCATTCCCTAACGGGTGGAAAGG AGAAAACGGGTTATTCGCCGTAGGGTTTACGAAACGGGGGCTGTTCGGAGCGTCGATGGACGCCAGGAAGATTGCAGAGGAGACTGAGCTCCGTTGGAAA GCTGACCAGACTACTAATATAAAGTGA
AA sequence Show only first row Show all	>Lus10034908 pacid=23181342 polypeptide=Lus10034908 locus=Lus10034908.g ID=Lus10034908.BGIv1.0 annot-version=v1.0 MEVCLDLCNYKAHTSLVVRDSVHVLPQQMLGTSTFGLSMWLLKWFPVPVVDRFLLLVSLCMLGDTSRLGLTRPKIGPLELKNLTGKTPVLDVGTLSKIRR GQIKVQRGIKKITQQMVEFVDGRFEYFDCIILATGYKSNVPSWLKGTEMFSEKDGLPRKAFPNGWKGENGLFAVGFTKRGLFGASMDARKIAEETELRWK ADQTTNIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10034908 [exp]	0	1
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	13.3	0.8287
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10029703 [exp]	38.3	0.7313
AT1G79070			SNARE-associated protein-relat...		Lus10031217 [exp]	47.4	0.7179
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006384 [exp]	90.8	0.7946
AT3G09430			unknown protein		Lus10000245 [exp]	117.4	0.7308
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10027306 [exp]	156.1	0.7710
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	168.2	0.7508
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	182.0	0.7520
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	217.1	0.7200
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10028457 [exp]	234.9	0.7585

Compare expression of checked genes

Lus10034908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.