Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16070 72 / 3e-16 unknown protein AT1G15260 72 / 6e-16 unknown protein AT3G24535 68 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023639 [exp] 235 / 8e-80 AT3G24535 72 / 4e-16 unknown protein Lus10035880 [exp] 101 / 9e-27 AT1G15260 94 / 4e-24 unknown protein Lus10025783 [exp] 92 / 5e-23 AT1G15260 97 / 3e-25 unknown protein Lus10037547 [exp] 86 / 2e-20 AT1G15260 88 / 2e-21 unknown protein Lus10011448 [exp] 84 / 1e-19 AT1G15260 89 / 9e-22 unknown protein Lus10008588 [exp] 40 / 0.0005 AT2G30395 97 / 2e-25 ovate family protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G080001 [exp] 114 / 1e-31 AT1G15260 52 / 3e-08 unknown protein Potri.003G053600 [exp] 94 / 7e-24 AT1G15260 100 / 1e-26 unknown protein Potri.001G182500 [exp] 92 / 2e-23 AT3G16070 97 / 2e-25 unknown protein Potri.019G128400 [exp] 41 / 0.0002 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034910 pacid=23181388 polypeptide=Lus10034910 locus=Lus10034910.g ID=Lus10034910.BGIv1.0 annot-version=v1.0 ATGTTGCTTAAAGTCCCAATCTCCAACACTAAACGCTTCTTCCACAGAACCCTTCAAACCGTCAAGTCCATCTTCTCCCCCACCATTGGTAATAGTTACC AAAAGATCCCCAAATCCCCACTTCCCCCTCCCATGGATCACATCACCAAAGAGAGTCCTCCTCATGACAATTCTGGGACAAGGATAGGTGACCATAACAA TATTAACGCCGACTGTTCAACCAAAGGGACTACTCCTTGTGGGAAATACAAGATCAAAAAGAGTGACGAAGAAGAGGGAAAGCAATCATGGTCTCGAGAG GAAAAGAGTTGGTGGGTGGCGAGGAAGTTGAAGGAGCTGGAGATGATTGATACCAGCGACGTGGATCATGTTCTCGACATCGAACAAATCCTTCACTACT ACTCTCGGCTCAGCTGCCCTGAGTATCTAGACATTGTTGACAAGTTTTTCATGGATGTTTATTCCGAGTTCTTCTCTTCTTCTAATTCTCCTGTTATTCA TTCTACATCCAAGTCGTCATCCCGCCTCTTGTTGATGCCCTGA
AA sequence Show only first row Show all	>Lus10034910 pacid=23181388 polypeptide=Lus10034910 locus=Lus10034910.g ID=Lus10034910.BGIv1.0 annot-version=v1.0 MLLKVPISNTKRFFHRTLQTVKSIFSPTIGNSYQKIPKSPLPPPMDHITKESPPHDNSGTRIGDHNNINADCSTKGTTPCGKYKIKKSDEEEGKQSWSRE EKSWWVARKLKELEMIDTSDVDHVLDIEQILHYYSRLSCPEYLDIVDKFFMDVYSEFFSSSNSPVIHSTSKSSSRLLLMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16070			unknown protein		Lus10034910 [exp]	0	1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	3.7	0.9710
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10010790 [exp]	7.1	0.9632
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	7.5	0.9639
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	12.0	0.9618
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	12.8	0.9559
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	15.1	0.9622
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	15.2	0.9622
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	17.7	0.9594
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	19.0	0.9552
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	19.0	0.9587

Compare expression of checked genes

Lus10034910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.