Plant FIBer expression Database

Lus10034912 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19540 559 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023641
[exp]
766 / 0 AT5G19540 548 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G080900
[exp]
607 / 0 AT5G19540 597 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10034912 pacid=23181383 polypeptide=Lus10034912 locus=Lus10034912.g ID=Lus10034912.BGIv1.0 annot-version=v1.0
ATGGCGTTCTCATCAGCTTCTTTCTCGATTATCTCCCCTGCCGCTTCACCCACAATTGCTGCCGATTCCACTTCCACCTCTTCTTACCCACTGAAGAAAC
CCAATCCAAACACTCTTATCTTTTCCAGACCACTCAATTTCTCTTCCTTCCGCTCCTCTCCACCTTCTAGAGTCTCCGCCATCTCTTCCGGAAGCACCAA
CTCCCCCACTTCCTCCGACGATGAGTCGCCGGAGATGTTCCTCCAGAGCAATTCCATTTCCGATTTCATGAGGTTCAAGAAAGGGCTTGATAGAGGCAGC
GGCGAGTTGCAGACGGCGCTTGTTCGCTATCGCAAGCGCTTTCCTTGGTCTATTCTCAGCCCTTTTCTCCAGGTTGATTTGGTTTCCACCATTCACATTG
CCGACAAAGAGTATTTCTCGATCCTCCAAAAGGAGCTCGAGACCTATGACTGTGTACTCTATGAAATGGTGGCCAGTAGAGAAAGTTTAGAGAACAGAAG
AAACCCTATTGCTTCAAGGAGACTGAAAGCCTTTCGGTCTAGAGGGGGATTTAACATTCTAGGGTTCATTCAGCGCCAAATGGCTCGAATCCTCTCCCTT
GATTTCCAGCTAGACTGCCTTGATTACCAGTCAGAGAAATGGTATCATGCAGATCTCGATTTTGAGACATTCAAGCAGCTCCAGGTTCCGTTTTCTTCCG
TTCCATTTTTAACAACAAGTCCAATCACAGTTTTGGCCAAGAAGCTAACTGGGATAATTCAATTCAATTGCATTATTTCTTTGGTTTTACATTTCCAGGA
TGAAAAGGGTGAGAGTGTGTTCACTTTCGCGAGAGACATGACTATAAAATCGACAAAAGCCATGCTGGAGCCCAGCATACCTGAGCACCTTGGCCCTTGG
AGATCAAAGCTTCTCTGGGCATCCCGTGTTCTTCCAATGCCCCTCGTCGGCTTTTGCCTCATAGGCGCTATGTGCAATGTGGGAAGTTCAGCATCAGAAT
TTCCCGAGCTAGAAGCCCTTTCTAGGCTTGATGTTGGCACTGCAATGAAGGTCTTTCTAGCCAGGCGACTCACCTCCGAGCTTACTCAGGTAACATCTGA
CGTAGAAGAGAAATCAGTGATCATAGGAGAAAGGAACAGAGTAGCCGTTGAAGCACTCAAGAGAGCAATAGATGAAGGGCACAACAAGATTGCCATACTC
TACGGTGGCGGCCACATGCCGGATTTGGGAAGGCGGCTAAGAGAGGAATTTGATCTTGTACCTTCAAGTGTCCAGTGGGTAACAGCTTGGTCCATACAGA
ATCGCGATGTAAAGACCAGTAGCTTCCCGTTTCTGAAGAGGATGGCTGAAGTTTCAGGGTGGCCGTTGAACCGGTACCAAACTCTGGCATTGGTCATATT
CTCTTCGGTGCTGGCTGTGGATCTTGTGTTCTGGGAGATATTTGTTGGGACTTCAGTGGATTTCGTATCTGAAATCGCTTCTAGGGTGAACGAATATGCT
GGTCAATACCTGGTAAAGAATAAGAAAAAGCAAGCTTTACTTGTTGAAACTACCCAGGAGCAACAGCTGGGAACTACTACTATAGTTCATCAAGATGTCG
ACAGAAGTAATAAACGGAAGAATAAGTTACCACGGTTTCTGAACCGTACCATTTCTGCTTACGATCGGAAAGAACAACTCGAGAAGTTGCAAGCTGAGAA
GAAGAAGAAACGTGGTGCGGATGATGGTGAGCCTAACCTCATGTAG
AA sequence
>Lus10034912 pacid=23181383 polypeptide=Lus10034912 locus=Lus10034912.g ID=Lus10034912.BGIv1.0 annot-version=v1.0
MAFSSASFSIISPAASPTIAADSTSTSSYPLKKPNPNTLIFSRPLNFSSFRSSPPSRVSAISSGSTNSPTSSDDESPEMFLQSNSISDFMRFKKGLDRGS
GELQTALVRYRKRFPWSILSPFLQVDLVSTIHIADKEYFSILQKELETYDCVLYEMVASRESLENRRNPIASRRLKAFRSRGGFNILGFIQRQMARILSL
DFQLDCLDYQSEKWYHADLDFETFKQLQVPFSSVPFLTTSPITVLAKKLTGIIQFNCIISLVLHFQDEKGESVFTFARDMTIKSTKAMLEPSIPEHLGPW
RSKLLWASRVLPMPLVGFCLIGAMCNVGSSASEFPELEALSRLDVGTAMKVFLARRLTSELTQVTSDVEEKSVIIGERNRVAVEALKRAIDEGHNKIAIL
YGGGHMPDLGRRLREEFDLVPSSVQWVTAWSIQNRDVKTSSFPFLKRMAEVSGWPLNRYQTLALVIFSSVLAVDLVFWEIFVGTSVDFVSEIASRVNEYA
GQYLVKNKKKQALLVETTQEQQLGTTTIVHQDVDRSNKRKNKLPRFLNRTISAYDRKEQLEKLQAEKKKKRGADDGEPNLM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G19540 unknown protein Lus10034912
[exp]
0 1
AT4G28030 Acyl-CoA N-acyltransferases (N... Lus10015504
[exp]
1.4 0.9091
AT2G41680 NTRC NADPH-dependent thioredoxin re... Lus10042048
[exp]
2.8 0.8917
AT1G03160 FZL FZO-like (.1.2) Lus10000656
[exp]
3.0 0.9059
AT1G01320 Tetratricopeptide repeat (TPR)... Lus10030258
[exp]
3.5 0.9126
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Lus10034166
[exp]
6.3 0.8892
AT5G27270 EMB976 EMBRYO DEFECTIVE 976, Tetratri... Lus10015739
[exp]
6.7 0.8821
AT3G19800 Protein of unknown function (D... Lus10040969
[exp]
9.5 0.9018
AT3G26710 CCB1 cofactor assembly of complex C... Lus10035119
[exp]
9.6 0.9019
AT3G02450 cell division protein ftsH, pu... Lus10034097
[exp]
11.6 0.8908
AT5G03900 Iron-sulphur cluster biosynthe... Lus10021361
[exp]
17.0 0.8770

Lus10034912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.