Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19660 952 / 0 ATSBT6.1 ,ATS1P SITE-1 protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023646 [exp] 1167 / 0 AT5G19660 1519 / 0.0 SITE-1 protease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081400 [exp] 1056 / 0 AT5G19660 1570 / 0.0 SITE-1 protease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10034918 pacid=23181381 polypeptide=Lus10034918 locus=Lus10034918.g ID=Lus10034918.BGIv1.0 annot-version=v1.0 ATGGGTTCGAAGATAAGTTCAGGGTGTAAAAGCTTATCTGGGACTAGTGTAGCGAGCCCTGTGGTTGCTGGTGTGGTATGCCTACTTGTCAGTGTGATCC CTGAAAGCGACCGTAAGGCAATTCTGAATCCTGCAAGCATGAAACAAGCACTTGTTGAGGGGGCTGCTAAGCTTTCTGGTCCCAATATGTATGAGCAGGG TGCAGGAAGAGTAAATCTGTTGGAGTCCTATGAAATCCTGAAGAATTATCAACCTCGGGCAACCATCTTCCCGGGTGTTCTTGATTTTTCAGATTGCCCT TACTCCTGGCCATTCTGCCGTCAACCACTATATGCTGGGGCCATGCCGGTTATGTTCAATGCTACGATTCTAAATGGGATGGGTGTAATTGGCTACGTCG AAGATACACCTACATGGAATCCTGTAGATGAAGACAGAGATATTTTAAGCATTCACTTTTCCTATTCAAAAATCATCTGGCCGTGGACTGGCTATATAGC ACTTCATATCCAAATTAAAGAAGAAGGTGCTCAGTTTTCTGGAAAAATTGAGGGTAATATCACTCTAACTGTGTACAGTCCTCCGGCCACTGTGTACAGT CCTCCGGCTCCTGGTGAAAAGAAGCGAAGAAGAAGCACTTGTGTGCTTCAGCTGAAACTGCAAGTGGTTCCAACTCCACCAAGGTCAAAGAGGATATTGT GGGATCAATTTCACAATATCAAATACCCTCCAGGATATATTCCGAGAGACTCGTTGGATGTCCGCAATGATATTCTTGATTGGCATGGAGATCATCTACA TACAAATTTTCATATTATGTTTAATATGTTGCGAGATGCTGGGTACTATGTCGAGACGCTCGGTTCTCCTTTCACTTGCTTTGATGCTCGCCAATATGGG ACGCTCCTTCTTGTTGATCTTGAAGATGAGTACTTCCAAGAGGAAATTGAGAAACTGAGGGAGGATGTTATTGGCAGTGGCATGGGATTAGCTGTATTTG CTGAATGGTATAACGTAGATACAATGGTGAAAATGAGATTCTTTGATGATAACACAAGAAGCTGGTGGACTCCTGTCACAGGGGGAGCAAATATTCCGGC ACTGAATGATCTCCTGGCGTCATTTGGCATTGCTTTTGGGGATAAGATTTTAAATGGAGATTTCTCCATCGACGGGGAGCAAAGTCGATATGCATCTGGG ACAGATATTGTGAGGTTCCCGTCAGGTGGCTATGTACACGGTTTCCCTTTTCTGGATAGCTCTGAAAGTGGGGCTACAGAGAATGTGCTGTCGAAATCAG GAACAGCTAAGGCAGATTCTCCGATTCTGGGTCTTGTGGAGGAAGGTGAAGGACGCGTCGCTGTGTATGGAGACTCCAACTGCTTGGACAGTAGCCACAT GGTCACCAATTGTTACTGGCTTCTGAAGAAAATACTCAACTTCACCAGCGGGAACGTTAGAGATCCATTACTCTTCTCCGAGTCTGCAAAACAAGACATG GCCATATATGTGGATGACAACCAATTACCATCTCGTAGAACAGATGTAAATTTCTCGACGTACTCTGCAGTGGTGGAGAAGGACTTGATCTGCTGGAGGG ATTCCCAATTTGAAGTATGGGAAACCAAGGGTCGCAGTCTACACATTAGGGGAAGAAACAGTAGATTTCCAGGCCATCCTATCATAGATTTAGGAAGAAG TCTAAATTCTACAGTCGACCCTTCCAATTTCAGACGTCCAAAAGTTACAGGGAGAAACCAGGGTGATGCGCAAGGAAATCATATATTTGACGAGCTTGAT GTGCCGATTCTGGTTGCAAGCCGTTGGCTTGTGCCTGCAGGAATAGCCATAACAGGTTTGGAAAACTATCCTGTCTATCAGTAG
AA sequence Show only first row Show all	>Lus10034918 pacid=23181381 polypeptide=Lus10034918 locus=Lus10034918.g ID=Lus10034918.BGIv1.0 annot-version=v1.0 MGSKISSGCKSLSGTSVASPVVAGVVCLLVSVIPESDRKAILNPASMKQALVEGAAKLSGPNMYEQGAGRVNLLESYEILKNYQPRATIFPGVLDFSDCP YSWPFCRQPLYAGAMPVMFNATILNGMGVIGYVEDTPTWNPVDEDRDILSIHFSYSKIIWPWTGYIALHIQIKEEGAQFSGKIEGNITLTVYSPPATVYS PPAPGEKKRRRSTCVLQLKLQVVPTPPRSKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPFTCFDARQYG TLLLVDLEDEYFQEEIEKLREDVIGSGMGLAVFAEWYNVDTMVKMRFFDDNTRSWWTPVTGGANIPALNDLLASFGIAFGDKILNGDFSIDGEQSRYASG TDIVRFPSGGYVHGFPFLDSSESGATENVLSKSGTAKADSPILGLVEEGEGRVAVYGDSNCLDSSHMVTNCYWLLKKILNFTSGNVRDPLLFSESAKQDM AIYVDDNQLPSRRTDVNFSTYSAVVEKDLICWRDSQFEVWETKGRSLHIRGRNSRFPGHPIIDLGRSLNSTVDPSNFRRPKVTGRNQGDAQGNHIFDELD VPILVASRWLVPAGIAITGLENYPVYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034918 [exp]	0	1
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	15.2	0.8255
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025532 [exp]	40.9	0.7798
AT3G22690			unknown protein		Lus10006600 [exp]	94.7	0.7475
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10023646 [exp]	234.0	0.7013

Compare expression of checked genes

Lus10034918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.