Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19660 496 / 4e-167 ATSBT6.1 ,ATS1P SITE-1 protease (.1) AT1G04110 48 / 1e-05 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G03620 45 / 6e-05 Subtilisin-like serine endopeptidase family protein (.1) AT1G20160 45 / 9e-05 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G59090 44 / 0.0002 ATSBT4.12 subtilase 4.12 (.1.2.3) AT2G39850 44 / 0.0003 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023646 [exp] 568 / 0 AT5G19660 1519 / 0.0 SITE-1 protease (.1) Lus10006689 [exp] 59 / 4e-09 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 56 / 5e-08 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 54 / 2e-07 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 51 / 2e-06 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006693 [exp] 50 / 4e-06 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10007036 [exp] 48 / 1e-05 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 48 / 1e-05 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 47 / 2e-05 AT5G67360 532 / 2e-179 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081400 [exp] 508 / 4e-172 AT5G19660 1570 / 0.0 SITE-1 protease (.1) Potri.019G006570 [exp] 56 / 4e-08 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 52 / 7e-07 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 47 / 2e-05 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G018600 [exp] 44 / 0.0002 AT1G20160 889 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.009G038001 [exp] 42 / 0.001 AT3G46850 794 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10034919 pacid=23181370 polypeptide=Lus10034919 locus=Lus10034919.g ID=Lus10034919.BGIv1.0 annot-version=v1.0 ATGGCCGTTCGTCGGACAACTTGGGGTTTCCCGGTGAAACCTTCGGTCTTCATCTCCGTCATTTCAGTCTTCCTTTTCCAGCAACTCGTGCCCCTTTTCC CCCGGACAGAAAACCTAACCCTAGTTTTCGAAAGCGGGGAAAGTAAGACCCTAGCTGCTGTGGGGAACAACTACATAGTGCGATTCAGGGAGTACAAGAA GGCCGAGGACCACCGGTGGTACTTGGAATCGGAGCTTGGACTGGGAAGATGGAAATGGATCGAGAGGAGGAACCCGGCGATGAAGTACGCGACGGATTTT GGGCTGGTGGCTGTCGAGGAGACTGCTGTGGAGGAAGTGGTGACGGAGATTGAGATGTTGGAAATGGTTAAGGATGTGAATGTGGATTTCAGCTATAATA GGGAATTGCTAGGTGCTTCTCTCACCGGCGGTGGCTCGTTTACTGATGGGAAGAAACGGCCTGGGAAGATATTCACTTCGATGTCTTTCAGTGAAAATAA GCATCACCCGGTGTCCGGAACAAGTAATTCGTCCGTTAAGTTGGGAAGGCAGCTGCTAGACCAGAAGTCACAGGTGACTTCATTATTTGGGGCAGATGTT CTTTGGTCGAAAGGATATACTGGTGCTAAGGTGAAGATGGCTATATTTGACACTGGCATTCGATCTGATCATCCACATTTCCGTAACATTATGGAACGTA CAAACTGGACAAGCGAGGATACTTTAAATGACAACCTTGGACATGGGACTTTTGTCGCTGGCGTTATTGCTGGTCAAGATGGTGAATGTCTTGGTTTTGC CCCTGATGCTGAGATTTATGCGTTCCGTGTATTTACAGATGCTCAGGTATCTTACACATCATGGTTTCTTGATGCATTTAACTACGCTATTGCAACAAAA ATGGACGTACTAAATTTGAGTATTGGTGGCCCTGATTTCCTGGACCTCCCTTTTGTTGAAAAGGTAAGGACTAGTTTTGAGCGTCTGTTATCTCTTCTGC CGGCAATGTTTCAGATAGGCAGGAGAGTAAAGTCGCTTGTGCCCACTGCAAGAATATGGGAGATAACAGCCAATAACATCATTATGGTATCGGCTATTGG AAATGATGGGCCACTCTATGGTACATTAAACAATCCAGCAGATCAAAGTGATGTTATTGGCGTCGGAGGAATAGATTACAATGGTCATATTGCTCCATTT TCATCACGTGGCATGAGCACTTGGGAGATTCCTCATGGGTGA
AA sequence Show only first row Show all	>Lus10034919 pacid=23181370 polypeptide=Lus10034919 locus=Lus10034919.g ID=Lus10034919.BGIv1.0 annot-version=v1.0 MAVRRTTWGFPVKPSVFISVISVFLFQQLVPLFPRTENLTLVFESGESKTLAAVGNNYIVRFREYKKAEDHRWYLESELGLGRWKWIERRNPAMKYATDF GLVAVEETAVEEVVTEIEMLEMVKDVNVDFSYNRELLGASLTGGGSFTDGKKRPGKIFTSMSFSENKHHPVSGTSNSSVKLGRQLLDQKSQVTSLFGADV LWSKGYTGAKVKMAIFDTGIRSDHPHFRNIMERTNWTSEDTLNDNLGHGTFVAGVIAGQDGECLGFAPDAEIYAFRVFTDAQVSYTSWFLDAFNYAIATK MDVLNLSIGGPDFLDLPFVEKVRTSFERLLSLLPAMFQIGRRVKSLVPTARIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNGHIAPF SSRGMSTWEIPHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	0	1
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	3.5	0.8515
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	4.1	0.8700
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	4.7	0.8175
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	7.7	0.8360
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033341 [exp]	8.0	0.8051
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	12.7	0.7928
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	13.6	0.8227
AT3G20720			unknown protein		Lus10011166 [exp]	15.0	0.8195
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	19.0	0.8194
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	19.6	0.8268

Compare expression of checked genes

Lus10034919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.