Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24560 632 / 0 RSY3 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023647 [exp] 445 / 4e-151 AT3G24560 332 / 7e-108 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3) Lus10035028 [exp] 233 / 1e-72 AT3G24560 171 / 2e-50 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081500 [exp] 759 / 0 AT3G24560 694 / 0.0 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01171 [flax] [poplar] ATP_bind_3 PP-loop family
Representative CDS sequence Show only first row Show all	>Lus10034921 pacid=23181352 polypeptide=Lus10034921 locus=Lus10034921.g ID=Lus10034921.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCAGGGTTGTGTTTCAGTTCGTCTCTCTCAGTTCAAAGCTGCTTTATGGCTAGGCTTCCACTTCCTTTGCTGAAGCCACGGCATAACTTTA ATTTCAAGTTCCTGATTTTCAAGGATATCCCAGTTGCAACAGCAGCTTCAATTGCACCTTCGACTCGACGATTTAGCTGTGCAACTTCTTTGGCTGAGGA CCGTGTCTCCGTAGACATGGAGAATTATAAGGAGGCTTTTGCAAGGAGAATGACCATGGCTGGTGTCAAACCACACCATTCCATTGCTTTAGGAGTATCA GGTGGCCCTGACAGTATGGCACTGTGTTTCCTAACTGCTGCTTGGAAAACCGATAATGCTGTTGACCGGAGTTGTGGCTATATTAATGGACTCTTGGCGG TAGTCGTTGATCACGGGCTACGTGCAGAGAGCAAAGAGGAGGCAAACATTGTATCCCACCGAGTCTCTAAAATGGGAATCAGATGCGAGCTTGCGGAATG TAATTGGTCAGATGGAAAGCCTAAACAAGGTCAACTGCAAGAAGCTGCACGTGAGATGAGGTATCAAATTTTCCAGAAAGTTTGCATTCAGCACCATATT GGTGTGTTACTTATTGCTCATCATGCAGATGACCAGGCTGAGTTGCTGATTCTTAGACTTTCACGAAGTAGCGGTGTGCTTGGACTTGCAGGAATGGCAT TTACTTCTGAGTTGTTCTCTTCAAACACGGTTTTTCATAATCAAGGTTTCAACAACAGAGGCACGCTTGTAGTGCGTCCACTCTTGCATTTTTCTAAAGA AGATATGTACAAGATATGTCAAGCAGGCAATCAGGAGTGGGTGGAGGACCCGACGAATCAAAGCACACTTTATGCTCGGAACAGGATTAGAATTGCATTG GGAAAATTGTCATCATATACCTTCCGGTCTGAGCTACAAGCAATCATATCTACCTGTCGCAAAACACGTGCATATGTTGACCACGTCTCGAATAATTTGA TAAATCAGGCCGTGACCATTACAGATCAAGGTTATGCTATTATTGATTTGATGATTCTTAATCCATCCGAAGTTTCTGATATATGCCTTTCGAAGTCCAT TGCCTTGGTACTGCAGTTCATCTCTCAACGGCAGAGAACTGTTAGAGGTGCCACTTCAAAATTGTTACTGGATTACATTCGCACTTTCCCGTGTAAGGCA AGTTTACCTGAGACTGCAACATCTTTTACAGCATCTGGATGCTACCTTTGCCCGGCTCCTGGATCTAAGGGAACTAAAGTCTTAGTTTGCTGTTCGGTTG ATTGTCCTCGGCCTTCAAAAACGGAAGTGATGAGCATAGATTTTAGTAGCGAACAGAAATGTTCAGACGAGATTATAGCCGAAGGGAAGTCATACATGGA ACAGTTCATACCAGATGTCTCAGACACCAAGTTTCTCGACATAACATCATGTCAATCAGTTTTAACCGAAGCCAGAAAACTCGGTCTCGTCAGTGAGGCA ACTTATAGAGGTATAATCATACTGCAAAGTGATGAAACAAAGCATTTTAAGCCCGACTCCAAGAATAAGATGAACTTGGAGCATGAAAGCACAAGGAATG ATGCCATTACAGCATCTGCAAGTTCTTTGCTTTTTCGACCCGGGCTAGCGTGCTACTTCATGAACAGATTCTTGATCACTTGGAACAAACTTCCGGAACG AGACAGACAGTTTAGTCATTGCTCCTTGGTAGTCGATCATCAAACAGCTGCCGAGATCCGGCCTATGGTAGAGGCTGACTGGCTTTATCTAGCTAAATTG GCAAAATCTGAAAACTGGAACGACTTGCAGCTGCAAATAACTATTGCAGGCAGTGAAGCAGGACAGAGAACAGAAAAAAGTGACTGCGACTTGGCATACT TGCAACTGTCGGCACAGAAATCTCTTCAATCGTTGAAGTCGATCCCTGCCGCCGCCAGACGAAGCCTGCCTGTATTAGTAAATCGACAAGGAGTCTTGCT GACTATCCCAAGCATTGGATTCAAAGTTTGTCCTTGTTTGACAGTTTCCTGTGCATTCAAGCCAAGAGTGCCATTAGGAGGAGGTCACACTTCATTTTTG TAG
AA sequence Show only first row Show all	>Lus10034921 pacid=23181352 polypeptide=Lus10034921 locus=Lus10034921.g ID=Lus10034921.BGIv1.0 annot-version=v1.0 MAGAGLCFSSSLSVQSCFMARLPLPLLKPRHNFNFKFLIFKDIPVATAASIAPSTRRFSCATSLAEDRVSVDMENYKEAFARRMTMAGVKPHHSIALGVS GGPDSMALCFLTAAWKTDNAVDRSCGYINGLLAVVVDHGLRAESKEEANIVSHRVSKMGIRCELAECNWSDGKPKQGQLQEAAREMRYQIFQKVCIQHHI GVLLIAHHADDQAELLILRLSRSSGVLGLAGMAFTSELFSSNTVFHNQGFNNRGTLVVRPLLHFSKEDMYKICQAGNQEWVEDPTNQSTLYARNRIRIAL GKLSSYTFRSELQAIISTCRKTRAYVDHVSNNLINQAVTITDQGYAIIDLMILNPSEVSDICLSKSIALVLQFISQRQRTVRGATSKLLLDYIRTFPCKA SLPETATSFTASGCYLCPAPGSKGTKVLVCCSVDCPRPSKTEVMSIDFSSEQKCSDEIIAEGKSYMEQFIPDVSDTKFLDITSCQSVLTEARKLGLVSEA TYRGIIILQSDETKHFKPDSKNKMNLEHESTRNDAITASASSLLFRPGLACYFMNRFLITWNKLPERDRQFSHCSLVVDHQTAAEIRPMVEADWLYLAKL AKSENWNDLQLQITIAGSEAGQRTEKSDCDLAYLQLSAQKSLQSLKSIPAAARRSLPVLVNRQGVLLTIPSIGFKVCPCLTVSCAFKPRVPLGGGHTSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	0	1
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	2.0	0.9063
AT1G09050			unknown protein		Lus10037506 [exp]	4.5	0.9045
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	8.8	0.8825
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	11.9	0.8594
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	12.2	0.9001
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	13.0	0.8198
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	13.7	0.8388
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	16.4	0.8807
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	17.5	0.8988
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	19.9	0.8499

Compare expression of checked genes

Lus10034921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.