Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21222 574 / 0 protein kinase family protein (.1) AT5G25630 504 / 7e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 206 / 6e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09900 200 / 1e-56 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12700 202 / 2e-56 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G39710 197 / 1e-54 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 196 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 195 / 2e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 193 / 5e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 192 / 9e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023650 [exp] 1092 / 0 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10014245 [exp] 199 / 3e-56 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 199 / 3e-55 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 197 / 3e-55 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10008593 [exp] 194 / 2e-54 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 191 / 2e-52 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 190 / 2e-52 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10023863 [exp] 191 / 4e-52 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029737 [exp] 189 / 7e-52 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081700 [exp] 726 / 0 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.018G037200 [exp] 631 / 0 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 241 / 8e-72 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 225 / 3e-65 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 217 / 7e-63 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 216 / 1e-62 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 216 / 2e-62 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 213 / 6e-61 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 208 / 2e-59 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 207 / 2e-59 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034924 pacid=23181348 polypeptide=Lus10034924 locus=Lus10034924.g ID=Lus10034924.BGIv1.0 annot-version=v1.0 ATGAACATCTTGATTCAAAGACGGAAGCCTAGAGAAGCAGAATCCATTTTCGACGGCCTAATGGAAGAAGGCCATAAGCCTACTCTTCTAACCTACACAA CACTGGTTGCTGCCTTAACTCGGCAGAGACGTTTCAAGTCCATCCTCTCACTCATATCTAAAGTGGAAGAGAATGGGATGAAACCTGACTCTATACTGTT CAATTCGATCATCAATGCCTTTTCCGAATCAGGAAATGTAAAAGATGCTATGAAAATCTTCCAGAAGATGAAGAGTAATGGATGTAAGCCCAACACGAGC ACCATCAACACTCTGATCAAAACATACGGAAATGCTGGGAAGCCAGAAGAAGCTTCGAAATTGTTGGAGTCGATGTTACAGGATGAAAATGTGAAGCCAA ACCAGAGGACATACAATATCCTAGTTAGAGCTTGGTGTAACAAGAGAAACATCGACGAGGCCTGGAATGTGGTGCACAAGATGGTTGCAGCTGGTTTGAA GCCGGATGTAGTCTCATATAACATACTAGCAAAGGCTTATGTTCAAATAGGCATGACAGACAAAGCTGAGGATTTGTTGTTTGAGATTCGGAGAAGTGGA TTGGCGCCAAACGAGCGTACCTGTGGTATCATTGTGAACGGCTATTGCAATGAAGGTAATATGGCGGAAGCCTCGAGGTTTGTATACAGGATGGAGAAGC TTGGCGTGCATCCCAATTTGGTCATCTTCAACTCTCTTATCAAAGGTTTTGCAAGTATCATGGACAAGGATGGAGTGGAGGAGGCGCTTGATGCCATGGA GGACTATGGAATCAAGCCGGATGTGGTAACATTCAGCACAGTAATGGATGCATGGGGTTCTGCAGGACTCATGGACAAATGCCAGGAAATCTTCAATGAC ATGTTGAAAGCAGGCATAGAACCTGATATCCATGCATTCAGCATTCTCGCTAAGGGTTATGTTCGAGCTGGAGAACCAGAGAAGGCTCTGTCAGTACTGG CTTCCATGGAACATTACCGAGTGCGTCCAAATGTTGTGATCTGTACAACCATCATCAGTGGCTGGTGCAGCGCGGGGAAAATGGATACCGCAATGGAGGC CTACGAGAGGATGTGTAAGATCGGTGTTTCGCCAAATTTACGAACTTTTGAAACTCTGATATGGGGATATGGGGAAGCCAGGCAACCGTGGAAAGCACAG GCGTTGCTGCAAGTTATGGAAGCGAAGGGCGTATCGCCTGACGATAACACAATGCAGCTTATCTCAGATGCTTGGTTCGCTGTTGGTTTAACAAGTGATG GCAAGAGAATCGTGGATGTTGAGCAATCAGATTCTGAGGTTGATGCAGATGGTACTAAGGATAACGAGTTACCAGGACAGATGTTGGAGTTGTACAAAGA CCCTGATCTCTCAGCTTCATATTCAGAAGTCTTGGAAGTACCTGGAGACGTAGCGAACGGTCAGAATGAAGCATCGCCTGTTAAGATAAGAAGCCAAATG ATCCTCAGAGCTCCTAGGTCTTCGTCCAAGGCTCCGTTTTTGGGTCCTAGATATACGTTCTTTCTTCGTGGCTCTAGATTCGGAAGGCAGCCACTAGTTA TTTGCAGCAAGCAGCAACACTGTTTCTCCGGCATTTGTGGGAAGTTCATGAGATCCTACAGCATCTTCTGA
AA sequence Show only first row Show all	>Lus10034924 pacid=23181348 polypeptide=Lus10034924 locus=Lus10034924.g ID=Lus10034924.BGIv1.0 annot-version=v1.0 MNILIQRRKPREAESIFDGLMEEGHKPTLLTYTTLVAALTRQRRFKSILSLISKVEENGMKPDSILFNSIINAFSESGNVKDAMKIFQKMKSNGCKPNTS TINTLIKTYGNAGKPEEASKLLESMLQDENVKPNQRTYNILVRAWCNKRNIDEAWNVVHKMVAAGLKPDVVSYNILAKAYVQIGMTDKAEDLLFEIRRSG LAPNERTCGIIVNGYCNEGNMAEASRFVYRMEKLGVHPNLVIFNSLIKGFASIMDKDGVEEALDAMEDYGIKPDVVTFSTVMDAWGSAGLMDKCQEIFND MLKAGIEPDIHAFSILAKGYVRAGEPEKALSVLASMEHYRVRPNVVICTTIISGWCSAGKMDTAMEAYERMCKIGVSPNLRTFETLIWGYGEARQPWKAQ ALLQVMEAKGVSPDDNTMQLISDAWFAVGLTSDGKRIVDVEQSDSEVDADGTKDNELPGQMLELYKDPDLSASYSEVLEVPGDVANGQNEASPVKIRSQM ILRAPRSSSKAPFLGPRYTFFLRGSRFGRQPLVICSKQQHCFSGICGKFMRSYSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	0	1
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	2.2	0.9350
AT5G08050			Protein of unknown function (D...		Lus10021151 [exp]	3.7	0.9148
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	3.7	0.9263
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	6.0	0.9200
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	6.0	0.9225
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10016906 [exp]	6.5	0.9059
AT5G08720			unknown protein		Lus10035962 [exp]	8.9	0.9204
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	11.5	0.9217
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	12.8	0.9112
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	14.1	0.8858

Compare expression of checked genes

Lus10034924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.