Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24590 316 / 1e-108 PLSP1 plastidic type i signal peptidase 1 (.1) AT1G06870 221 / 5e-70 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 218 / 2e-69 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G23465 63 / 5e-12 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 62 / 1e-11 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 59 / 2e-10 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT3G08980 51 / 8e-08 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023651 [exp] 521 / 0 AT3G24590 318 / 2e-109 plastidic type i signal peptidase 1 (.1) Lus10032753 [exp] 232 / 2e-70 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10011671 [exp] 140 / 1e-41 AT2G30440 172 / 7e-54 plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) Lus10013703 [exp] 58 / 4e-09 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10005571 [exp] 55 / 4e-09 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10002492 [exp] 53 / 2e-08 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10004822 [exp] 50 / 3e-07 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10025393 [exp] 50 / 3e-07 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157900 [exp] 333 / 7e-115 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.018G081800 [exp] 326 / 6e-112 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.014G036400 [exp] 231 / 7e-74 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.002G079600 [exp] 168 / 1e-51 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.001G380400 [exp] 61 / 3e-11 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 59 / 1e-10 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 54 / 1e-08 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.007G071400 [exp] 53 / 2e-08 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF10502 [flax] [poplar] Peptidase_S26 Signal peptidase, peptidase S26
Representative CDS sequence Show only first row Show all	>Lus10034925 pacid=23181400 polypeptide=Lus10034925 locus=Lus10034925.g ID=Lus10034925.BGIv1.0 annot-version=v1.0 ATGATATCTCCGTCACAGATTCCAAATTTTCAGTCCACTTCCCTCTTCTCTAAACCCTGTCTAATCCCCCATTCCCAATCCTTTCCTCGCTTCTCGATCC CGCACTCGACGCCCACACACATCAAGTTTTCCATTAAAAATCGCAGCCTACGTCAGAAAAAGTCAACGGTGGTGGTGGCTGGAGCTAGTAACAGCGACGA AGGAGGTGGGGGTGGGGACGATGGAGGCGACGGCGAGCTGGAGAAAAGGAGCGGAGTTTTGCCGGAGTGGTTGAACTTCTCTCTAGACGATGCCAAGACT GTTGTCGCAGCTTTGGCGATTTCGCTTGCTTTCAGGAACTTCATTGCTGAGCCGAGATACATTCCTTCTCTGTCCATGTATCCGACTTTCGATGTCGGCG ATAGACTTGTAGCCGAGAAGGTCACGTACTACTTCAGAGAGCCTTGTACAAATGATATAGTGATATTTAAGAGTCCTCCAGTCCTGCAGAAAGCTGGATA CACCGATGACGATGTTTTCATCAAACGGATCGTTGCCAACGAAGGTGATACTGTCGAGGTCCGCAATGGGAAGCTTGTAGTAAATGGAGTCGAGAGAGAT GAAAAGTTCATCAATGAAAAGCCATCTTATAACATGAAACCTACTAAGGTACCAGAGGACTATGTATTTGTCATGGGGGACAACCGGAATAACAGCTACG ATTCACATGTTTGGGGTCCTCTACCAAGGAAGAACATAATCGGAAGATCAGTGGTCCGGTATTGGCCTCCTTACCGGATCGGCGGCACAATATCTGAGAC CAACTGCACCGTTGATAAACTGGAGAGCACTGAAGCCCCTGCGCTCAAGTCCAACTGA
AA sequence Show only first row Show all	>Lus10034925 pacid=23181400 polypeptide=Lus10034925 locus=Lus10034925.g ID=Lus10034925.BGIv1.0 annot-version=v1.0 MISPSQIPNFQSTSLFSKPCLIPHSQSFPRFSIPHSTPTHIKFSIKNRSLRQKKSTVVVAGASNSDEGGGGGDDGGDGELEKRSGVLPEWLNFSLDDAKT VVAALAISLAFRNFIAEPRYIPSLSMYPTFDVGDRLVAEKVTYYFREPCTNDIVIFKSPPVLQKAGYTDDDVFIKRIVANEGDTVEVRNGKLVVNGVERD EKFINEKPSYNMKPTKVPEDYVFVMGDNRNNSYDSHVWGPLPRKNIIGRSVVRYWPPYRIGGTISETNCTVDKLESTEAPALKSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Lus10035920 [exp]	1.4	0.8223
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	3.0	0.7905
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	8.8	0.8212
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	10.1	0.8234
AT3G62370			heme binding (.1)		Lus10011771 [exp]	11.7	0.7037
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	21.0	0.7002
AT4G32915			unknown protein		Lus10006882 [exp]	21.4	0.7665
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	28.1	0.7117
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	29.4	0.7772
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	33.2	0.7291

Compare expression of checked genes

Lus10034925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.