Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45688 179 / 6e-54 unknown protein AT5G42860 172 / 3e-51 unknown protein AT3G24600 174 / 2e-50 Late embryogenesis abundant protein, group 2 (.1) AT4G35170 145 / 5e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 117 / 2e-30 unknown protein AT3G08490 56 / 5e-09 unknown protein AT2G35460 43 / 0.0001 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22870 40 / 0.0008 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023652 [exp] 604 / 0 AT1G45688 183 / 2e-55 unknown protein Lus10035869 [exp] 274 / 5e-91 AT1G45688 219 / 3e-69 unknown protein Lus10025793 [exp] 273 / 9e-91 AT1G45688 221 / 5e-70 unknown protein Lus10010232 [exp] 197 / 5e-61 AT1G45688 416 / 3e-146 unknown protein Lus10029743 [exp] 185 / 4e-56 AT1G45688 301 / 4e-101 unknown protein Lus10009749 [exp] 161 / 2e-47 AT5G42860 256 / 2e-84 unknown protein Lus10022644 [exp] 154 / 2e-44 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003341 [exp] 128 / 3e-34 AT2G41990 221 / 4e-70 unknown protein Lus10010231 [exp] 68 / 3e-14 AT5G42860 84 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183600 [exp] 296 / 5e-100 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 289 / 3e-97 AT1G45688 176 / 6e-53 unknown protein Potri.006G160100 [exp] 285 / 1e-95 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.002G124600 [exp] 223 / 3e-71 AT1G45688 284 / 1e-94 unknown protein Potri.014G026800 [exp] 198 / 2e-61 AT1G45688 301 / 2e-101 unknown protein Potri.007G045000 [exp] 187 / 4e-57 AT1G45688 273 / 4e-90 unknown protein Potri.004G180900 [exp] 170 / 8e-51 AT2G41990 256 / 1e-84 unknown protein Potri.009G140600 [exp] 169 / 2e-50 AT2G41990 232 / 5e-75 unknown protein Potri.001G267200 [exp] 74 / 1e-14 AT3G08490 196 / 6e-61 unknown protein Potri.009G061300 [exp] 74 / 1e-14 AT3G08490 209 / 7e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10034926 pacid=23181431 polypeptide=Lus10034926 locus=Lus10034926.g ID=Lus10034926.BGIv1.0 annot-version=v1.0 ATGTACAACGCCAAATCGTCGGAGTCGGACCTGACAAGCCTGGCACCTTCCTCCCCTCGCTCTCCAAAGCGCCCAGTGATCTACTTCGTCCAGAGCCCCT CCCGTGACTCCCATGACGACGGCGACAAATCCGCCGTCTCCTCTTCTTCTCTCCCCAACACAACCCCCATCGATTCCCCTTCCCATCCCAATTACTACTC ACGCGCCTCCAGCCGCGTCTCCGGCACCTACGCCCTCGCTTCCTCTGCAGCCTCCTCCTCCTCCTCCGGACGTAATAAAAAACTTTTACCCCCCAAACGC TCCGCCGGAGGTTCAGGACACTGCCACGTCATCCTCGAGGAAGCCGATTTTGTCGCTGCCGCTGTCGACCCCGCCAAGTGTCGGGCTTTGCTGGTCGTGA TGGGTTTCGCCGCCGTTTTCACTGCTTTCTGTTTCGTCATCTGGGGTGCTAGCCGTCCTTTCCGGCCCCACATCCTCGTCAAGAGCTTGACAGTTCACAA CTTCTACTTCGGACAAGGATCAGACTTGACTGGAGTTCCCACAAAGATGCTCACCACAAACTGTTCCGTGGGGATCAAGGTATACAACCCAGCTTCTTTC TTCGGAATCAGGATCACCTCTACTCCTATTCATCTTATGTTCTCTGAGCTCATCGTCGCTTCTGGCCAGCTGAGGTCCTATTACCAACCGAGGAAGAGCC ACCGAGCAGTCTCGGTTAACGTCAATGGGATGAAAGTCCCACTTTACGGTGCAGGGGCGAGCTTAACAAGATCGGCCGGTGAGGAAGTTCGGATTCCAGT GACATTGGTGTTCCAAGTGAGATCCAAAGGCTACGTTATTGGGAAATTGGTCAAGTCATGGCATACTCAGCGGATCTCTTGTGCTCTTGTGTTTGATTCA AGAATAACCAAACCCATTCCCCTTAAAAAGCGTTCTTGTACATACAAACTCATATGA
AA sequence Show only first row Show all	>Lus10034926 pacid=23181431 polypeptide=Lus10034926 locus=Lus10034926.g ID=Lus10034926.BGIv1.0 annot-version=v1.0 MYNAKSSESDLTSLAPSSPRSPKRPVIYFVQSPSRDSHDDGDKSAVSSSSLPNTTPIDSPSHPNYYSRASSRVSGTYALASSAASSSSSGRNKKLLPPKR SAGGSGHCHVILEEADFVAAAVDPAKCRALLVVMGFAAVFTAFCFVIWGASRPFRPHILVKSLTVHNFYFGQGSDLTGVPTKMLTTNCSVGIKVYNPASF FGIRITSTPIHLMFSELIVASGQLRSYYQPRKSHRAVSVNVNGMKVPLYGAGASLTRSAGEEVRIPVTLVFQVRSKGYVIGKLVKSWHTQRISCALVFDS RITKPIPLKKRSCTYKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45688			unknown protein		Lus10034926 [exp]	0	1
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	6.6	0.8602
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	15.7	0.8405
AT1G16160		WAKL5	wall associated kinase-like 5 ...		Lus10013143 [exp]	21.5	0.8184
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	22.6	0.8127
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	25.2	0.8284
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011831 [exp]	26.0	0.7204
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	28.8	0.8110
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	29.9	0.7974
					Lus10010306 [exp]	30.0	0.7987
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	30.3	0.7992

Compare expression of checked genes

Lus10034926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.