Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24620 546 / 0 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 538 / 0 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT1G79860 528 / 0 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 506 / 2e-174 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT5G19560 496 / 7e-172 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1) AT3G16130 439 / 3e-148 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT5G02010 381 / 3e-126 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 367 / 1e-120 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 363 / 2e-118 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 360 / 7e-118 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025797 [exp] 539 / 0 AT1G79860 608 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10038560 [exp] 537 / 0 AT1G79860 565 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10037866 [exp] 533 / 0 AT1G79860 591 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10035865 [exp] 533 / 0 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10040248 [exp] 377 / 8e-124 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 372 / 4e-122 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 374 / 1e-121 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 374 / 2e-121 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 366 / 7e-120 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082400 [exp] 639 / 0 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Potri.003G052600 [exp] 540 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.001G183800 [exp] 540 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.004G179742 [exp] 378 / 1e-124 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 377 / 2e-124 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.006G092600 [exp] 377 / 9e-124 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 371 / 2e-120 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.005G247100 [exp] 364 / 2e-119 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 366 / 3e-119 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 363 / 1e-118 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10034927 pacid=23181337 polypeptide=Lus10034927 locus=Lus10034927.g ID=Lus10034927.BGIv1.0 annot-version=v1.0 ATGTTCGAGATACCTGGGAGACAAATTCAAAACATGTTCTTTGTCGACCATGGTAACAACAGCAGCAACAATGCCAACGATAATGACGGTACTGTTGTTG ACCAGGATAAACCACCGCAACTACCCCCACCACAACTGCAACATCAACAATCATTAAAAGCTAGTACAAGTACTAGTACCCCTCCAAACTTACCGAAAAG CAATAGCAGTAATGAAGGATCAACAGAGCAACTCACTTTTAATGCAACAACATCAACAATAAATGAGACACCATCCGTAATCGAAGGATCATCACCTCCT GAGCGCGAAAAACGTGTCGAATCTGGCCCGCCTCCTAAAACACCGACCCTTAAAGAAAAGGGTCCTTCTGATTTGGATTTGATGAAGGAAAAGTTTGGGA AGCTTTTACTAGGGGAAGACATGTCTGGTGGTGGAAAGGGTGTTTCTTCAGCTTTGGCATTGTCCAATGCAATCACTAACCTTGCAGCATCTGTTTTCGG AGAACAAAAAAGGCTGGAGCCAATGTCTGCAGATGCAAGGGGAAGGTGGAAGAAAGAAATTGATTGGCTTCTATCTGTAACTGATCACATTGTTGAGTTT GTTCCTTCGCAGCAATCCAATAATGGTGTCAATATGGAGATCATGGTGACGAGGCAAAGAAGTGATCTACTGATGAACATCCCAGCTCTGAGGAAACTCG ATACCATCCTCGTCGAATTGTTAGATCAATTCGGGAAACAAAACGAATTCTGGTATGTGTCGAAATCTGATGACGATTCTGAGAAAGGACAAGGAAGAAA TGAGGAGAAATGGTGGATCCCAACAGCAAAAGTACCCAAAAATGGTTTATCAGAACCCACAAGAAGATGGATGCAATCCCAGAAAGATGCAGTTAACCAA GTACTTAAAGCAGCAATGGCCATTAACGCTCTAGTCCTCTCAGAAATGGATGTTCCTGAAGAATACATCGAATCCCTTCCCAAGAATGGAAGATCAAGCC TTGGAGACTCGATATACAAATCTATAACAGATGAACACTTCGATCCAACTCAGTTCCTCTCTACTATGGACTTAACAAATGAGCACAAAGTGCTGGAGCT GAAGAATAGGATCGAAGCATCCATTGTGATATGGAAACGGAAAATGATCCAAAAAGATAATGGCAAGGCAGCATGGGGTTCAGCGGTGAGTATGGAGAAG AGAGAGCTTTTCGAAGACAGAGCAGAGACGATCCTGCTCATCCTCAAGCAACATTTTCCTGGACTCCCGCAATCTGCACTTGATATAAGCAAGATTTCAA ACAACATGGACGTTGGCCAGGCTATTCTGGAGAGCTACTCGAGGATCATAGAGAGCTTGGCATACACAGTGTTGTCGAGGATTGAAGACGTCCTGTTTGC TGACAATGCGGCCCAGAATCCACCACCGGATCCGAGCGAGAAACTGCCGGAGGAAGAAACTTCATCATCTGCAGAGACACCGTCATCAATGACGCTGTCA GACTTCATGGGATGGGGTATGGACAAGGGGGAGAGTGAGCTGAAGAAATCAGCATCATCAGGAAACATTGAGGACTTGGAAGACAAGGGAAACGTGAAAC CAGTAGCCACTCCTAAGAAATCTTCGTACCTGGAGAGGCTTGAGAATCTGAGTGGATTAAGAAGTCCAACAACTCGACATTAA
AA sequence Show only first row Show all	>Lus10034927 pacid=23181337 polypeptide=Lus10034927 locus=Lus10034927.g ID=Lus10034927.BGIv1.0 annot-version=v1.0 MFEIPGRQIQNMFFVDHGNNSSNNANDNDGTVVDQDKPPQLPPPQLQHQQSLKASTSTSTPPNLPKSNSSNEGSTEQLTFNATTSTINETPSVIEGSSPP EREKRVESGPPPKTPTLKEKGPSDLDLMKEKFGKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQKRLEPMSADARGRWKKEIDWLLSVTDHIVEF VPSQQSNNGVNMEIMVTRQRSDLLMNIPALRKLDTILVELLDQFGKQNEFWYVSKSDDDSEKGQGRNEEKWWIPTAKVPKNGLSEPTRRWMQSQKDAVNQ VLKAAMAINALVLSEMDVPEEYIESLPKNGRSSLGDSIYKSITDEHFDPTQFLSTMDLTNEHKVLELKNRIEASIVIWKRKMIQKDNGKAAWGSAVSMEK RELFEDRAETILLILKQHFPGLPQSALDISKISNNMDVGQAILESYSRIIESLAYTVLSRIEDVLFADNAAQNPPPDPSEKLPEEETSSSAETPSSMTLS DFMGWGMDKGESELKKSASSGNIEDLEDKGNVKPVATPKKSSYLERLENLSGLRSPTTRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24620		ATROPGEF8, ROPG...	RHO guanyl-nucleotide exchange...		Lus10034927 [exp]	0	1
					Lus10039750 [exp]	4.6	0.7347
					Lus10006424 [exp]	5.3	0.6315
					Lus10005187 [exp]	6.5	0.7302
					Lus10010117 [exp]	7.9	0.7302
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	9.2	0.7302
					Lus10002152 [exp]	10.2	0.7302
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	11.2	0.7302
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	12.1	0.7302
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	12.3	0.7280
					Lus10012774 [exp]	13.1	0.7100

Compare expression of checked genes

Lus10034927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.