Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67300 543 / 0 Major facilitator superfamily protein (.1.2) AT1G79820 497 / 8e-173 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT1G05030 278 / 4e-87 Major facilitator superfamily protein (.1) AT5G16150 266 / 1e-82 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G30220 139 / 4e-35 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G20780 130 / 3e-32 AtPLT4 Major facilitator superfamily protein (.1) AT1G75220 128 / 8e-32 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G54730 128 / 8e-32 Major facilitator superfamily protein (.1.2.3) AT1G77210 127 / 2e-31 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G19450 124 / 3e-30 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035862 [exp] 293 / 4e-96 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10009158 [exp] 285 / 3e-89 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 279 / 5e-87 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 277 / 4e-86 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 271 / 2e-84 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10017610 [exp] 258 / 2e-78 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10030010 [exp] 253 / 2e-77 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10025800 [exp] 241 / 4e-76 AT1G79820 357 / 2e-122 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10042820 [exp] 141 / 9e-36 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083200 [exp] 578 / 0 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G185300 [exp] 519 / 0 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.014G060800 [exp] 275 / 3e-86 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 275 / 2e-85 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 227 / 8e-70 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.004G039100 [exp] 135 / 3e-34 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.018G085200 [exp] 131 / 8e-33 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.007G024300 [exp] 128 / 7e-32 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 125 / 9e-31 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.006G015300 [exp] 124 / 3e-30 AT4G16480 788 / 0.0 inositol transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10034930 pacid=23181422 polypeptide=Lus10034930 locus=Lus10034930.g ID=Lus10034930.BGIv1.0 annot-version=v1.0 ATGTTCTTGTTTCTTCCTCTTGACGGCAAGCAAATTATACTGAATTGGCAATTACAGAGCTGTGTATGCGGTAAAGGGAACTGTTGCATGGCTGCCCGTC AACTTGAAGCGTCCTATATGTACAAGCGAGTGCCTTCAAGAGATCACGATAATATGACTGACGTGGAAGATAATGAAGCTCTTGTGCAGGGTAAACTTGA AGTGGAAACTACAAATCCTTCGTGGAGAAGAGCACTTCCTCATGTACTGGTGGCAACAATACCATCCCTCTTATTTGGTTACCATCTTGGGGTAGTAAAC GATCCACTTGAAAGCATATCGCTGGATCTTGGTTTTGACGGGCATGCCTTGGCAGAAGGCCTGGTGGTCAGTATATCTCTTGTAGGTTCCTTGATTGGAT CATTGTTCAGTGGTTCAATTGTTGATAGCGTTGGGCGCCGCAAGGCCTTTCAGCTATCTGCATTGCCCATGATTCTTGGTCCTGCCATCAGTGCATCAAC CAAAACTCTTGCTGGTATGCTCATAGGAAGGTTCTTAGTGGGTATTGGTATGGGTCTTGGACCAGTTGTGGCTTCGCTTTATGTGACCGAGATCTGTCCG GCTCATGTTAGGGGCACTTATGGAAGCTTCATTCAGATTGCAACATGTCTTGGGTTTCTGGTCTCTCTATTTTTTGGACTCCCTGTGAGAGAAATAAGAG GATGGTGGCGCACTTGTTTTTGGGTTTCTACAGTTCCTGCTGGACTACTTGCTCTCGCCATTACATTATGTGTTGAGAGCCCTCATTGGCTGTTCAAGCA AGGTAAAATAGATGAAGCGGAAGCAGAATTCGAGAGACTGTTAGGCGGAACACATGTGGAAAGTGCAATGCATGAGTTGCACAAAGTAGACAGGGGAGAT GACCTCGATACTGTGAAGTTCTCGGAATTGCTTTCTGGCCGAAATTTTAGAGGTAGATTTGTTCGACAGGCTTCGTATTTACTCTCTCCTTTTGCAGTTG TTTTTATTGGATCAACCCTATTTGCTTTCCAACAGCTATCTGGTATCAACACTGTGTTTAATTTCTCTTCAACTGTATTCAAAAGTGCTGGAGTCCCTTC AGAATTGGCGAATATTGTTGTCGGAGTTGCAAATTTATTAGGTTCTATAATTGCAATGGCTCTGATGGATAGACAAGGAAGGAAATCTCTGTTGATTTGG AGCTTTTTTGGACTTGCTGTATCTATGGGACTTCAAGGTGCCGCAGCAAGCCCCTACTTGTCTAGCGGTTTTGCTTCGTACCTCTCTGTTGGTGCAATGT TAATGTGCGTATTGACATTCTCTCTAGGAGCCGGCCCAGTCCCAGGTCTCCTCCTCCCAGAAATTATACCAAATCGAATCAGGGCAAAAGCTATGGCTAT CTGTGATAAACTTTTCTTGTGGCTGCTCCAGCGGCTGGGCAGACAGCTACTCTACACATGCTTCGCCGCGTTCTGCTTGATGGCAGTAGCCTTTGTCAGG AGAAACGTCATGGAAACTAAAGGAAAATCGCTCCATGAAATCGAGATTGCACTTCTATCCCCTGAGTTCTGA
AA sequence Show only first row Show all	>Lus10034930 pacid=23181422 polypeptide=Lus10034930 locus=Lus10034930.g ID=Lus10034930.BGIv1.0 annot-version=v1.0 MFLFLPLDGKQIILNWQLQSCVCGKGNCCMAARQLEASYMYKRVPSRDHDNMTDVEDNEALVQGKLEVETTNPSWRRALPHVLVATIPSLLFGYHLGVVN DPLESISLDLGFDGHALAEGLVVSISLVGSLIGSLFSGSIVDSVGRRKAFQLSALPMILGPAISASTKTLAGMLIGRFLVGIGMGLGPVVASLYVTEICP AHVRGTYGSFIQIATCLGFLVSLFFGLPVREIRGWWRTCFWVSTVPAGLLALAITLCVESPHWLFKQGKIDEAEAEFERLLGGTHVESAMHELHKVDRGD DLDTVKFSELLSGRNFRGRFVRQASYLLSPFAVVFIGSTLFAFQQLSGINTVFNFSSTVFKSAGVPSELANIVVGVANLLGSIIAMALMDRQGRKSLLIW SFFGLAVSMGLQGAAASPYLSSGFASYLSVGAMLMCVLTFSLGAGPVPGLLLPEIIPNRIRAKAMAICDKLFLWLLQRLGRQLLYTCFAAFCLMAVAFVR RNVMETKGKSLHEIEIALLSPEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	0	1
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	1.0	0.9144
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	2.8	0.8851
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011010 [exp]	4.2	0.8528
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	7.5	0.8791
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	7.7	0.8709
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	8.9	0.8745
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	10.6	0.8709
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030569 [exp]	13.3	0.7961
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	13.4	0.8542
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10010352 [exp]	15.6	0.8761

Compare expression of checked genes

Lus10034930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.