Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28980 313 / 5e-104 CAK1AT, CDKF;1 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) AT1G73690 122 / 1e-31 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 120 / 3e-31 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G66750 114 / 5e-29 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT4G19110 109 / 8e-27 Protein kinase superfamily protein (.1.2.3) AT5G63610 107 / 7e-26 HEN3, CDKE;1, CDK8, ATCDK8 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) AT3G48750 104 / 7e-26 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT5G45430 103 / 2e-24 Protein kinase superfamily protein (.1.2) AT2G38620 100 / 4e-24 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT5G14640 100 / 9e-24 ATSK13 shaggy-like kinase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023659 [exp] 559 / 0 AT4G28980 555 / 0.0 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Lus10040530 [exp] 109 / 6e-27 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 108 / 2e-26 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10003155 [exp] 107 / 5e-26 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10023050 [exp] 106 / 2e-25 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10032422 [exp] 106 / 2e-25 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10036995 [exp] 101 / 2e-23 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015816 [exp] 101 / 2e-23 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10013088 [exp] 100 / 3e-23 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083300 [exp] 354 / 3e-120 AT4G28980 640 / 0.0 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Potri.012G052100 [exp] 117 / 1e-29 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 117 / 1e-29 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.001G088000 [exp] 108 / 3e-26 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.003G142900 [exp] 108 / 3e-26 AT5G63610 676 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.004G133500 [exp] 105 / 3e-26 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G003400 [exp] 102 / 5e-25 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.010G056900 [exp] 104 / 2e-24 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G142800 [exp] 100 / 5e-24 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.015G092100 [exp] 102 / 1e-23 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034931 pacid=23181435 polypeptide=Lus10034931 locus=Lus10034931.g ID=Lus10034931.BGIv1.0 annot-version=v1.0 ATGATCGTGCATCGGGATTTGAAGCCCGGCAATCTCTTGATCTCGCACGACGGGATTCTCAAATTGGCTGATTTCGGTCAGGCTAGGATACTCACAGAGG CTGGATCTATTGCAGCTTATGAGAACCTTCATCCAAGTGAACCAATCTACATAAACCACGGTGCTCCAAATACTGCTGAGTTCAATTACGAGAGAGGTAA CTGGGGTATGAAAAGGCCTCTTGCAAGCTTAGGCGAAGGAGGAGGAGATTTGTACGGTCAGGATCAGTTGGATGAAATGGAGAAGGATACAAGAGATGGC AACTTATCTTGTCTTGCAACTGGTACCGCTAGCGAGTTTGGGGACGATAGCCCCAACTTCGACGATGTTGATGCCGGGGACGATAGGCAAGGAGGTTGTT TCACATCTTGCGTCGGGACTCGATGGTTCAGGGGCCCCGAGCTGCTCTACGGGTCAACAGATTACAGAATGGAGATTGATCTTTGGTCCTTAGGCTGCAT TTTTGCCGAGCTTTTGACCTTAGAGCCTCTTTTTCCGGGGTCATCTGATATAGACCAACTTGCTAGGATTATCAATGTCTTGGGGAACTTGACAGAACAA GTCTGGCCAGATTGTGTGAACCTCCCTGATTTCGGGACAATCTCTTTTGGCAAGGTAGAAAATCCTTCTGGATTAAAGTCCTGCCTCATTAAGTGTTCGG ATGAAGAGGTCTCGCTGGTGAAGAAGTTGGTCTGTTACGACCCTTTTAGCAGAGCTACTGCCATGGAGTTGCTCCATGATACTTACTTCACCGTAGAGCC ACTGCCTGTCCCGCTCTCGGATCTTCATGTGCCTCGGACAAACACCAACCTTGATACAGACTCTCCTGGATGGTACAACTATAAAGATGGAGGCTCTGAC TCTGATTTTGAAGACTTTGGTCTCATGCATGTTACAGAGACTGGTAGTGGATTTTCAGTCAAGTTCTCATGA
AA sequence Show only first row Show all	>Lus10034931 pacid=23181435 polypeptide=Lus10034931 locus=Lus10034931.g ID=Lus10034931.BGIv1.0 annot-version=v1.0 MIVHRDLKPGNLLISHDGILKLADFGQARILTEAGSIAAYENLHPSEPIYINHGAPNTAEFNYERGNWGMKRPLASLGEGGGDLYGQDQLDEMEKDTRDG NLSCLATGTASEFGDDSPNFDDVDAGDDRQGGCFTSCVGTRWFRGPELLYGSTDYRMEIDLWSLGCIFAELLTLEPLFPGSSDIDQLARIINVLGNLTEQ VWPDCVNLPDFGTISFGKVENPSGLKSCLIKCSDEEVSLVKKLVCYDPFSRATAMELLHDTYFTVEPLPVPLSDLHVPRTNTNLDTDSPGWYNYKDGGSD SDFEDFGLMHVTETGSGFSVKFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	0	1
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	2.6	0.8303
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	4.5	0.8230
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	4.6	0.7926
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	5.9	0.7709
AT1G54920			unknown protein		Lus10029936 [exp]	6.0	0.7556
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	12.0	0.7367
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	15.5	0.7721
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	18.9	0.7659
AT3G22430			unknown protein		Lus10041204 [exp]	19.7	0.7543
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	20.5	0.7513

Compare expression of checked genes

Lus10034931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.