Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28950 363 / 1e-129 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) AT3G48040 311 / 2e-109 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT5G62880 310 / 1e-108 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT4G35020 303 / 4e-106 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT5G45970 299 / 2e-104 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT3G51300 298 / 3e-104 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT1G75840 296 / 1e-103 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT1G20090 295 / 6e-103 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT2G17800 293 / 2e-102 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT4G35950 290 / 3e-101 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023660 [exp] 412 / 5e-149 AT4G28950 367 / 2e-131 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) Lus10034538 [exp] 308 / 3e-108 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10033131 [exp] 302 / 8e-106 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 301 / 2e-105 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10039899 [exp] 299 / 1e-104 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034876 [exp] 300 / 3e-104 AT3G48040 356 / 2e-126 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) Lus10002181 [exp] 296 / 2e-103 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 295 / 8e-103 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10019786 [exp] 290 / 1e-100 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083400 [exp] 378 / 2e-135 AT4G28950 393 / 2e-141 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) Potri.015G073000 [exp] 320 / 7e-113 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.012G077800 [exp] 312 / 2e-109 AT5G62880 359 / 6e-128 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.004G174900 [exp] 309 / 2e-108 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.009G134600 [exp] 306 / 3e-107 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.014G051800 [exp] 301 / 3e-105 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.013G123800 [exp] 300 / 5e-105 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 300 / 6e-105 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.002G019500 [exp] 300 / 8e-105 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G242000 [exp] 300 / 9e-105 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10034932 pacid=23181407 polypeptide=Lus10034932 locus=Lus10034932.g ID=Lus10034932.BGIv1.0 annot-version=v1.0 ATGAGTGCTTCTAAGTTCATTAAATGTGTTACAGTTGGAGATGGAGCTGTGGGTAAGACATGTATGCTCATTTGCTATACCAGCAACAAGTTCCCAACTG ATTATATACCCACTGTTTTTGACAACTTCAGCGCTAATGTGGCCGTGGATGGCAGTATCGTCAATCTGGGTCTTTGGGACACTGCTGGTCAAGAGGATTA CAGTAGGCTGAGGCCACTGAGCTACAGAGGAGCTGATATATTTGTGCTGGCTTTCTCATTAATTAGTAGGGCAAGCTATGAAAACGTTCTCAAGAAGTGG ATGCCTGAACTCCGCAGGTTTGCTCCCAGTGTCCCTATTGTTCTTGTTGGGACAAAGCTAGATCTTCGTGAAGAAAGAGGGTATCATGGGGATCTTATGA ATTCCAATGGCATAACAACTGCTCAGGGAGAGAATCTGAGGAAACAGATTGGTGCAGCAGCTTACATAGAATGTAGCTCCAAGACACAACAGAATGTTAA AGCTGTGTTTGATACTGCCATCAAGGTTGTTCTTCAACCTCCAAGGAGGAAAGAAACGATGACAAGGAAGAAAAGGCATACAAGTTCTGGGCGTGCAATT GCGTGA
AA sequence Show only first row Show all	>Lus10034932 pacid=23181407 polypeptide=Lus10034932 locus=Lus10034932.g ID=Lus10034932.BGIv1.0 annot-version=v1.0 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKW MPELRRFAPSVPIVLVGTKLDLREERGYHGDLMNSNGITTAQGENLRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKETMTRKKRHTSSGRAI A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	0	1
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	5.0	0.9014
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	5.3	0.9040
AT2G22560			Kinase interacting (KIP1-like)...		Lus10025717 [exp]	6.5	0.8885
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	6.7	0.9203
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	7.1	0.9140
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10023660 [exp]	7.1	0.8829
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	8.1	0.8932
AT1G71760			unknown protein		Lus10030260 [exp]	10.5	0.9117
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	12.0	0.8970
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10025709 [exp]	13.1	0.8412

Compare expression of checked genes

Lus10034932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.