Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16180 172 / 1e-50 Major facilitator superfamily protein (.1) AT1G52190 170 / 2e-49 Major facilitator superfamily protein (.1) AT1G68570 143 / 1e-39 Major facilitator superfamily protein (.1) AT1G72140 139 / 2e-38 Major facilitator superfamily protein (.1) AT1G22540 138 / 5e-38 Major facilitator superfamily protein (.1) AT3G54140 130 / 5e-35 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G62680 129 / 1e-34 Major facilitator superfamily protein (.1) AT3G54450 128 / 2e-34 Major facilitator superfamily protein (.1) AT1G72120 128 / 3e-34 Major facilitator superfamily protein (.1) AT1G22550 127 / 3e-34 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023663 [exp] 359 / 2e-122 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 176 / 1e-51 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 171 / 9e-50 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10008539 [exp] 150 / 1e-42 AT1G52190 371 / 8e-122 Major facilitator superfamily protein (.1) Lus10017817 [exp] 150 / 3e-42 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 150 / 3e-42 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 142 / 3e-39 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10041466 [exp] 141 / 1e-38 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 140 / 2e-38 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087500 [exp] 253 / 4e-81 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 190 / 5e-57 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 165 / 9e-48 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 159 / 9e-46 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 159 / 1e-45 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 159 / 1e-45 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 155 / 2e-44 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 155 / 2e-44 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 155 / 4e-44 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 153 / 2e-43 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10034936 pacid=23181339 polypeptide=Lus10034936 locus=Lus10034936.g ID=Lus10034936.BGIv1.0 annot-version=v1.0 ATGGTGTATTCGGCATCATCACCGTCACTGTGTTGGGTGGCATTGTACGACCGCATTTTGGTTCCCATCCTCGCCAAATTCTTCAATCTCCCCGCTGGGA TCTCCAATAAGCATCGGATGGGTATCGTCTTTGCGATCTCTTGCATTGCAACTGCGGTCGCAGGCTTGGTAGAGCACCAACGACGAGCGGTGGCATTTAG GGAAGGCGTCGCGGATGACCACAATGCTGTGGCGGGGATGTCGGCCAACTGGCTGATTATTCAGTACTGTTTGATCGGACTTGCTTTCAGCATGATAGGT CAGATCGAATTCTATTACTCGCAGTTCCCAAGGAACATGAGGAGTATTGCCATGGCGTTGGTGTCCCTAGGGCTTGGAATGGGGAATTTAGCGGGAAGTT TGATTGTAACGGTGGTTAATAACGTCACTAGGCGAGGCGGGAAAGTTAGCTGGGTGGGTAATAATTTGAATAGGGGACACTATGACTATTACTATTGGCT GCTGTCAGCTTTGAGTGTCGGGAATTTCTTTTACTATTTGGTTCTTAGCTGGGCTTATGGGAATGACGACAGAAAGATTTGGGATGAGGCCGAAGCAGAG AACGACGACGCAGAAGAAAGGGAGATGAAGAGTATGGAACGAGACTTGTGA
AA sequence Show only first row Show all	>Lus10034936 pacid=23181339 polypeptide=Lus10034936 locus=Lus10034936.g ID=Lus10034936.BGIv1.0 annot-version=v1.0 MVYSASSPSLCWVALYDRILVPILAKFFNLPAGISNKHRMGIVFAISCIATAVAGLVEHQRRAVAFREGVADDHNAVAGMSANWLIIQYCLIGLAFSMIG QIEFYYSQFPRNMRSIAMALVSLGLGMGNLAGSLIVTVVNNVTRRGGKVSWVGNNLNRGHYDYYYWLLSALSVGNFFYYLVLSWAYGNDDRKIWDEAEAE NDDAEEREMKSMERDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16180			Major facilitator superfamily ...		Lus10034936 [exp]	0	1
					Lus10010778 [exp]	4.7	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	5.4	1.0000
					Lus10011496 [exp]	7.3	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	10.5	1.0000
					Lus10011759 [exp]	10.8	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	12.2	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10007708 [exp]	13.9	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	15.2	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	15.6	1.0000
					Lus10024550 [exp]	15.7	1.0000

Compare expression of checked genes

Lus10034936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.