Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 222 / 1e-58 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G46510 89 / 1e-17 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 87 / 6e-17 PUB15 Plant U-Box 15 (.1) AT1G23030 84 / 5e-16 PUB11 ARM repeat superfamily protein (.1) AT1G71020 83 / 6e-16 ARM repeat superfamily protein (.1.2) AT2G28830 82 / 3e-15 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 80 / 6e-15 ATPUB14 plant U-box 14 (.1) AT1G49780 79 / 7e-15 PUB26 plant U-box 26 (.1) AT3G54790 80 / 8e-15 ARM repeat superfamily protein (.1.2) AT2G23140 77 / 5e-14 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023666 [exp] 1553 / 0 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 737 / 0 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023667 [exp] 691 / 0 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10017257 [exp] 688 / 0 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 126 / 4e-29 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 112 / 9e-25 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039197 [exp] 99 / 3e-20 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 97 / 1e-19 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10040834 [exp] 89 / 1e-17 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083600 [exp] 1377 / 0 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 709 / 0 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 669 / 0 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 243 / 3e-65 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 132 / 7e-31 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 118 / 2e-26 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 102 / 2e-21 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 97 / 6e-20 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.001G238500 [exp] 94 / 4e-19 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 89 / 8e-18 AT3G54850 821 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10034937 pacid=23181424 polypeptide=Lus10034937 locus=Lus10034937.g ID=Lus10034937.BGIv1.0 annot-version=v1.0 ATGGAGAACCCTACTACAGCAGCCCCCGTCCCCGCCGATATAGATTGTATAGAAAACCCTATATCACCGGAAATAATCCTCCACCATACAACCTCCTTCC TCTCCAAAACAATCTCGGAGCCCCAACTCCGCAGCCACCTCTTCGCCCTCCTCCACAGCGGCGGCAAAACTCACTTCGCCGCCCGATTCACATCCTCCGC CGCCCTCCTCCTCAAGCCACACAGCCTCGCATTGGAAGCCGTGGAGAAAGCAATCGCCGCCACCAACCTCTCCCTACAGTCCTCTTCTTTAGCCGTGGCA GAGAAGCTCCTACTCTCATGCCCAAACACTCCTTTCTCTTCCTTCCTCCTCTCCCTCATATATTCTCTAATCCACCATCCTTCCAAGGCCGCCGCGAGCC TTCTCTCCCTCTTCTGCCTCAACCCGTCCGCAGCGAGATCGAAAATCGCTCCGGTTATCTTCCAGGAGCTCTTCTTCGTCCATCTCCTCCCTGTTTTTCA GTGGTTCGAGGAACAGAGGAACCGAATTCTGTCGAATTCGGGCTCAAGCGGTGATGACGACGACGGTAATGATTCGGCAGCGGATGGGCGGGAAGGTTTG TCGGTGAAGACGAAGGTGCTTTCGAAGATGAATGGAGGACAGGCGAAGGAGTTGAAGGAGCTGGAGAGTATGTATGAGGAGGTTCTTAATGAGAATTGCA GAGTTTTTGCTAATTATTTTATTGAGGTTTTGAGAAGCAGCGGAGGAGAAGTGTCGGTTGGTCCGCCGCCGGCGGTAGTGTTGAAGGACTTGAGGAGAGA TGGCGATCATGGATTGCAGGGAAAGAAAGGAAGTCGAGAGGCAGGGGATTTTGGCGCGCAATTCGGACGGTATAATATGCAGCCGATATGGAATGAAACA AGACAAGGATGTTTATCAGAAACCTGCAGTCCATTTGGCACCTCCACCACTAAATCCACCTGTTCAACGCCCCGCCGTGTTTCTCCTCAATCACCACTTT TTACTAACAATCCTCAGACTGCAAATTCTGACTCAGAGGACACAACTTTCTCTTCATCTTCTGCTTCTTCTACCTCTGCTCCTTTCCCTGACTCTGATCC TCCACCAACGGAAACCAACAAAACAGCCACATTGTTCAACTCTGCAACTCATATCTTGCCTAACACTAAACAACAACTCCACACTGCTACACCTCTTCCC AGACGTTCTTCTCCAGGTAAGAACCAGACTCTAATGGCAGATTTCGACACTCTGCCTAGCATTAATGGTGGACACCAGCAAATCACTCCACTGCCAAAGG ACTTCGTCTGCCCAATCACAACCAACATCTTCGTCGATCCAGTCACCTTGGAGACTGGCCAAACCTACGAGCGTAAAGCGATTCAGGAATGGCTAGATCG AGGCAACTCAACTTGTCCAATCACCCGCCAGAAATTGACCGGAACTCTCCTCCCCAAAACAAACTACGTCCTCAAGCGGCTAATCGCCAGCTGGCTCGAG AACAATCCTGCATCTAACCGTCCCGAAACTCCTCCATTAAACAACAACACTACTACATCAGCCTCCTCTCCCAACAGCGTCATCGCCGCGGCCGCCGTCG ATTGCTCCATCGGCCAGCTCCGGCACGCAATAAACAACTTGTGCATGTCAGAAATACTCGACGAATCGGAGGCGGCTGTGTTGAGGATTCAAAAGTTCTG GCAGGATGGGAAGAACTTATTAGGGTTTGATGTTCAGAGCATGTTAGCTAGGCCGGCTGTTGTGAGTGGATTCGTCGAGATCTTGTTCAATTCCGTCGAC CCGACGGTTCTGAGAGCTACCGTGTTTCTGCTATCCGAATTGGGGTCCCGAGATAAATCGGTTACCCAGACGTTGACCAGGGTTGACTCCGACGTTGACT GCATAGTTGCTCTTTTCAAAAAAGGACTTCTGGAAGCTGTGGTGTTGATCTATCTCCTGAGGCCTTCTCCAGGGAGTTTGATGGAGATGGAAATGGTGGA TTCTTTGGTAGCTGTGCTGAAGAGGAAAGAGAGTGATCATATGGTGATGAAGATGTGTATGAAGCCCAGAACTGCGGCGGTTCTTCTGTTAGGGCAGATA CTTGGAAATGGTGATGAAGAAAGTGTCATTGTGGCTGACGTGGCGAAAAAAGTCGTGAGGGATGCTGACGTGGTGGGGAGTGTTGTTGGGAGCTTGGAAT CTGACTGGACCGAGGAGAGGATCTCTGCAGTTGGGGTGTTGCTCAAGTGTATGCAAGTTGATGGGAGATGTAGGAATGATGTTGCTGATAAGGCTGAACT GGCTAATGTGTTGGAGAGCTTTGTTAAAGGTAATGATGTTGAAAGGTTCCAGATCGTTCGTTTCCTTTCCGAATTGGTCAAACTCAACCGGAGAACGTTT AACGAGCAAGTGCTTCACATAATCAAGGATGAGGGAAAATTCAGCACAATGCATACTTTCCTTAGTTATTTGCAGACTGCTCCTGTGGATCAATCTCCTG TTCTAGCTGGCCTACTTTTCCAACTAGATCTTCTGGCTGAGCCACGAAAGATGAGCATGTATAGGGAAGAAGCAATGGACACGTTGATTTCGTGCCTTAG GGATTCGGAGTCTCCTGCTGCGCAAATTGCTGCTGCGAGGACCATTGTATCATTGCCAGGGAGGTTTACTGCCTCAGGGAAGTCCCTTACTAGAGCGTTT CTCCTGAAACGTGCGGGAATCGATAAGAGTTTCCGAAACCTTGTCCAGATGGATCAGTCTGGAAACTTTTTTGCTGAAACTGAAGAGCTAGAAGAGAGAG CAGCTGAGGAATGGGGGCTGAAAATGGCGTCTGCGATAGTGAGCCATGAGTTTGGACTTATCTTTGAGGCATTAGCTGAAGGGATGAAGAGTAGATACTC GGACCTTCATTCGGCTTGCTTCGTTTCGGCAGTATGGCTGGTGCATATGTTGGGTGTTCTTCCAGACACTGGGATTCGAGGAGCAGCTCGAGTCTGCTTG CTCAAGCGCTTTGTATCCATCTTCAAGTCGGCCAAGGATATGGACGATAGAGTCCTGGCATTGCTTGCTCTCAAGAGCTTTATCAAAGATCCTGAGGGGC TCCAGGAGCTGAATAACTACATGAAAGATCTGAAGAAAGGGCTGAGAGAATTGAGGAAGTCATGCCCATTGGCATTTGAAATTCTCAAGGTTTTCTCTGA GGGACGAGACAGTAGTGCTGACCTGTGGAACCACAAAGAACTTGTTCAAGTAGATTGTTGCGAGAATGGAGAGGTGCTGTCAATTGTATACTTCAAGGAC AAGATCATTTCAGGCCATTCAGATGGAACTATGAAGGTATGGACTGGGCGAGGCAGCATTCTTCATCTTATCCAAGAAATTAGAGAACATTCCAAGGCAG TCAGTAGCTTGGTGGTTCTGCAATCAGGAGACAAGCTATACAGTGGTTCACTGGACAAAACTACCAGGGTTTGGTCCATAGTCGGCGACACGTTGAACTG TATTCAAGTCCATGATATGAAGGAACAAGTTCATAACCTGGTGGTTGCTAGCAGCATTTCTTGCTTCATCCCAGCAGGAGCCGGCATCAAGGTTCATTCC TGGAGCGGCAGGTCCAAGTTAATCAACTCAGGGAGATACGTAAAGTGCTTATCTTTAGTTCAGGGGAAACTTTACTGTGGCTGCCATGACAATAGCATTC AGGAAATTGATTTGGCAACAGAAACGGTATCGTGCATTCAAACGGGATCCAGGAAACTTCTAGGGAAAGTAAGCCCAGTATATGCGCTGGAGGTTCGGGA TGGGCTCGTGTATTCTGCAGTTTCTCCCTTGGATGGATCGCCTGTTAAGATATGGAGTGCTTCGAATCATGAGCTGGTGGGATCATTGTCGACAACAATG GAGGTGAGGACAATGGCTATAAGTACAGAACTGATATATCTGGGAGGCAAAGTTGGGGCAATAGAGATCTGGGATCGAAAGAAGCACAATAGGGTGGAAA CGATACAAGCTTGCACTAACAGCAGGGTTGTTTCCATGGCTGTGGATGGTAATGAGGAGATATTAGTTGCTGGAACTTCAGACGGATGGATTCAGGTGAG CGGATCATGGAATTAA
AA sequence Show only first row Show all	>Lus10034937 pacid=23181424 polypeptide=Lus10034937 locus=Lus10034937.g ID=Lus10034937.BGIv1.0 annot-version=v1.0 MENPTTAAPVPADIDCIENPISPEIILHHTTSFLSKTISEPQLRSHLFALLHSGGKTHFAARFTSSAALLLKPHSLALEAVEKAIAATNLSLQSSSLAVA EKLLLSCPNTPFSSFLLSLIYSLIHHPSKAAASLLSLFCLNPSAARSKIAPVIFQELFFVHLLPVFQWFEEQRNRILSNSGSSGDDDDGNDSAADGREGL SVKTKVLSKMNGGQAKELKELESMYEEVLNENCRVFANYFIEVLRSSGGEVSVGPPPAVVLKDLRRDGDHGLQGKKGSREAGDFGAQFGRYNMQPIWNET RQGCLSETCSPFGTSTTKSTCSTPRRVSPQSPLFTNNPQTANSDSEDTTFSSSSASSTSAPFPDSDPPPTETNKTATLFNSATHILPNTKQQLHTATPLP RRSSPGKNQTLMADFDTLPSINGGHQQITPLPKDFVCPITTNIFVDPVTLETGQTYERKAIQEWLDRGNSTCPITRQKLTGTLLPKTNYVLKRLIASWLE NNPASNRPETPPLNNNTTTSASSPNSVIAAAAVDCSIGQLRHAINNLCMSEILDESEAAVLRIQKFWQDGKNLLGFDVQSMLARPAVVSGFVEILFNSVD PTVLRATVFLLSELGSRDKSVTQTLTRVDSDVDCIVALFKKGLLEAVVLIYLLRPSPGSLMEMEMVDSLVAVLKRKESDHMVMKMCMKPRTAAVLLLGQI LGNGDEESVIVADVAKKVVRDADVVGSVVGSLESDWTEERISAVGVLLKCMQVDGRCRNDVADKAELANVLESFVKGNDVERFQIVRFLSELVKLNRRTF NEQVLHIIKDEGKFSTMHTFLSYLQTAPVDQSPVLAGLLFQLDLLAEPRKMSMYREEAMDTLISCLRDSESPAAQIAAARTIVSLPGRFTASGKSLTRAF LLKRAGIDKSFRNLVQMDQSGNFFAETEELEERAAEEWGLKMASAIVSHEFGLIFEALAEGMKSRYSDLHSACFVSAVWLVHMLGVLPDTGIRGAARVCL LKRFVSIFKSAKDMDDRVLALLALKSFIKDPEGLQELNNYMKDLKKGLRELRKSCPLAFEILKVFSEGRDSSADLWNHKELVQVDCCENGEVLSIVYFKD KIISGHSDGTMKVWTGRGSILHLIQEIREHSKAVSSLVVLQSGDKLYSGSLDKTTRVWSIVGDTLNCIQVHDMKEQVHNLVVASSISCFIPAGAGIKVHS WSGRSKLINSGRYVKCLSLVQGKLYCGCHDNSIQEIDLATETVSCIQTGSRKLLGKVSPVYALEVRDGLVYSAVSPLDGSPVKIWSASNHELVGSLSTTM EVRTMAISTELIYLGGKVGAIEIWDRKKHNRVETIQACTNSRVVSMAVDGNEEILVAGTSDGWIQVSGSWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	0	1
					Lus10028488 [exp]	6.2	0.8667
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	6.3	0.8089
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004176 [exp]	6.5	0.7971
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	8.9	0.8094
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	9.4	0.7957
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	14.5	0.7573
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	15.0	0.8335
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	15.5	0.7725
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	26.0	0.8143
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	31.5	0.7612

Compare expression of checked genes

Lus10034937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.