Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28940 330 / 1e-112 Phosphorylase superfamily protein (.1) AT4G24340 177 / 3e-53 Phosphorylase superfamily protein (.1) AT4G24350 174 / 8e-52 Phosphorylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023668 [exp] 515 / 0 AT4G28940 371 / 6e-128 Phosphorylase superfamily protein (.1) Lus10028834 [exp] 153 / 3e-41 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G161538 [exp] 365 / 2e-126 AT4G28940 457 / 2e-162 Phosphorylase superfamily protein (.1) Potri.008G028500 [exp] 179 / 7e-54 AT4G24350 418 / 2e-147 Phosphorylase superfamily protein (.1.2) Potri.008G028700 [exp] 176 / 2e-52 AT4G24350 436 / 3e-154 Phosphorylase superfamily protein (.1.2) Potri.008G028600 [exp] 164 / 3e-48 AT4G24350 429 / 2e-151 Phosphorylase superfamily protein (.1.2) Potri.019G050200 [exp] 137 / 9e-38 AT4G24340 159 / 6e-46 Phosphorylase superfamily protein (.1) Potri.013G082800 [exp] 125 / 3e-33 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G081233 [exp] 125 / 3e-33 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G082066 [exp] 124 / 6e-33 AT4G24340 201 / 6e-62 Phosphorylase superfamily protein (.1) Potri.013G082700 [exp] 122 / 3e-32 AT4G24340 179 / 1e-53 Phosphorylase superfamily protein (.1) Potri.013G080400 [exp] 122 / 3e-32 AT4G24350 205 / 4e-64 Phosphorylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF01048 [flax] [poplar] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10034939 pacid=23181433 polypeptide=Lus10034939 locus=Lus10034939.g ID=Lus10034939.BGIv1.0 annot-version=v1.0 ATGAAGCCGTTCACTTTCTGTTTGGTTGTTTTGTTCCTCCTGTGGAATAACACAACTACTGAAGCAGCAGTTGCGTCAGGTGACCTTGTCAAAATCCATG GAATCAACCAGTTGGGTCATTATTTGGGAATCGTTGTGCCAAATATGTTCGAGATGAGCCCCCTCCTTCAATCAAACACATTCGTCCCGGATTCTACAAC TCCTTGGCTCGACGTTATGGGGAGAAGATTCAGGATAGGAAAGGTGGGAAACAAGAAGGTTATCATTGTAATGACAGGATTAAGCATGATAAATGCAGGG ATCACTACAGAGTTGCTTTTGACACTGTTCAACCTGGAAGGTGTTCTTCACTACGGAATTGCTGGGAATGTAAATCCAAAGTTTCAGATAGGAGATGTCA CAATCCCTCAGTACTGGGCTCATTCTGGCCTCTGGGTTTGGCAGAGGTACGGATCAGGGCAAAATGAAAGTCTACCATTGGAATCAAATGGAGACTACAC CAGAGAAATCGGTCTCCTTAGATATGCAGACTACAATACTAACAATGGATCGGACAACCTACTGAACAACGTTTGGTATCAACCTGAAGAGATATTTCCA GTGAACGGAATTCCTGAAGTCAGACAACATATATTCAAGGTTCCCGTTGATTCACGTTATCTGCATGTCGCAAAAATTGTCGAGAAAAAAGGTAAGAGCC TGGAGAGATGCGTGAATTCAACGACTTGTTTGCCAAGAGCATCGGTGACGGCAACTGTGGAAATGGGGGTGAGCGGAAGTGTGTTTGTAGACAACAAGGC CTACGCAAATTTCTTGCACTCAAAGTTTAACGCCACAACGATTGATATGGAGAGTGCTGCCGTAGCGCTGGTGTGTTACCAGCAGCGGATCCCTTTTATT GCCATCAGAGCTCTCTCCGACCATAGCTCTCTCCTGCTGGGCTGGCGGTGGCTCTGCTCTTTCAAATGA
AA sequence Show only first row Show all	>Lus10034939 pacid=23181433 polypeptide=Lus10034939 locus=Lus10034939.g ID=Lus10034939.BGIv1.0 annot-version=v1.0 MKPFTFCLVVLFLLWNNTTTEAAVASGDLVKIHGINQLGHYLGIVVPNMFEMSPLLQSNTFVPDSTTPWLDVMGRRFRIGKVGNKKVIIVMTGLSMINAG ITTELLLTLFNLEGVLHYGIAGNVNPKFQIGDVTIPQYWAHSGLWVWQRYGSGQNESLPLESNGDYTREIGLLRYADYNTNNGSDNLLNNVWYQPEEIFP VNGIPEVRQHIFKVPVDSRYLHVAKIVEKKGKSLERCVNSTTCLPRASVTATVEMGVSGSVFVDNKAYANFLHSKFNATTIDMESAAVALVCYQQRIPFI AIRALSDHSSLLLGWRWLCSFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28940			Phosphorylase superfamily prot...		Lus10034939 [exp]	0	1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	1.0	0.9166
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	1.7	0.8670
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028501 [exp]	5.7	0.8671
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	12.4	0.8367
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	16.7	0.7828
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	20.3	0.8282
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	25.3	0.8085
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	25.4	0.7846
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	25.5	0.8299
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	27.3	0.8061

Compare expression of checked genes

Lus10034939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.