Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29100 169 / 5e-49 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 151 / 9e-43 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G20640 87 / 1e-18 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 81 / 1e-17 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 81 / 8e-17 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 80 / 1e-16 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G31730 71 / 1e-14 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 67 / 2e-13 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G49830 67 / 2e-12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 67 / 4e-12 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023669 [exp] 390 / 2e-135 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011105 [exp] 152 / 2e-46 AT4G29100 126 / 4e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 89 / 2e-19 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 88 / 4e-19 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018400 [exp] 85 / 2e-18 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 84 / 3e-18 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 84 / 4e-18 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 77 / 2e-15 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027064 [exp] 71 / 7e-15 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083700 [exp] 189 / 1e-57 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 137 / 4e-38 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 130 / 2e-35 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 92 / 2e-20 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 91 / 3e-20 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G032400 [exp] 85 / 3e-18 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 81 / 6e-17 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 81 / 1e-16 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 78 / 2e-16 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G126800 [exp] 74 / 7e-16 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034940 pacid=23181406 polypeptide=Lus10034940 locus=Lus10034940.g ID=Lus10034940.BGIv1.0 annot-version=v1.0 ATGAGGCCACCTCCTCCTTCATCTTCATCTTCTTCTTCTTCCTCCTCTTCACTTCCTTTCCCTTCTTGGCATGAACACACTAATAGTACTAACGAAGATC ATCGACTCCCCGAATCATGGAGCCAACTCCTCCTGGGAGATGAAGGCAAGATGAGCAATTTCCAAGAGGCAAGCAAGAGGTTTGATAGCTTTTACCAAGA TCATCAGCAACTGCTCAACAGTACTAATAATAATGTTATTAATGGATGTTCATCCTCGTTACCGGATGTGAAGCAAGAGAGCTACGGACATGATGCAACT GAAGAAGATCAGTTTAATCATCAAGCTTCAGCTAATTATAACAATTGGTCTCATCACCAATTCATTGCTAATAACAACTCATCATCTCCTAACTCCACAA GTTTCATGGATTTCTCTGCTATCAGTAGCCACCACCCGCCTCCCCAGCCTCTGCTCGATCCATCATCATCCGAGAGGAACAGCTCTACTACTGGAGCTGT TGGTGCTGGTGCTGGTGCTGGTGCTGGTGGTGGAGGTGGGGCACTGAAGAAAGCTAGGGTTCAAGCTTCTGCTTCTTCTTCTTCAACTCAATCTACCATT AAGACTGACACAGCTTCTGTCTTGTTAGAAGCTGTTGGGTACATTAGATTCCTTCAAAGCCAAATAGAGGCTCTGAGCATGCCTTACTTAGGCAGTGGAA GCACGAACATGAGGCGCCCTTACCATCAACACCTACAACATTCTGTTACAGGAGAAAGGAGTTGTGTGTTCCCAGAGGACCCTGGTCAGCTCTTGGATGA TAGCTGTCTGAAGAGGAAAACACTTTCTGATCAACAACAGGAATTTGATGAGGCGCCGAAGAAGGATTTAAGGAGTAGAGGGTTGTGCCTTGTCCCAGTA TCCTGCACTACGCAAGTTGGTAATGAGAATGGAGCTGATTACTGGGCTCCTACACTCGGGGGAGGGTTCCGGTGA
AA sequence Show only first row Show all	>Lus10034940 pacid=23181406 polypeptide=Lus10034940 locus=Lus10034940.g ID=Lus10034940.BGIv1.0 annot-version=v1.0 MRPPPPSSSSSSSSSSSLPFPSWHEHTNSTNEDHRLPESWSQLLLGDEGKMSNFQEASKRFDSFYQDHQQLLNSTNNNVINGCSSSLPDVKQESYGHDAT EEDQFNHQASANYNNWSHHQFIANNNSSSPNSTSFMDFSAISSHHPPPQPLLDPSSSERNSSTTGAVGAGAGAGAGGGGGALKKARVQASASSSSTQSTI KTDTASVLLEAVGYIRFLQSQIEALSMPYLGSGSTNMRRPYHQHLQHSVTGERSCVFPEDPGQLLDDSCLKRKTLSDQQQEFDEAPKKDLRSRGLCLVPV SCTTQVGNENGADYWAPTLGGGFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	0	1
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	1.0	0.9032
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	1.4	0.8860
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	2.0	0.8525
AT1G71110			unknown protein		Lus10007962 [exp]	3.5	0.8501
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	4.2	0.8756
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	6.3	0.8524
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10017055 [exp]	8.4	0.8013
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	10.5	0.8334
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	10.6	0.8272
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	11.2	0.8402

Compare expression of checked genes

Lus10034940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.