Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19950 629 / 0 GC1 golgin candidate 1 (.1.2) AT1G18190 60 / 4e-09 GC2 golgin candidate 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012966 [exp] 1099 / 0 AT2G19950 716 / 0.0 golgin candidate 1 (.1.2) Lus10009060 [exp] 60 / 5e-09 AT1G18190 499 / 5e-169 golgin candidate 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086600 [exp] 723 / 0 AT2G19950 626 / 0.0 golgin candidate 1 (.1.2) Potri.006G164350 [exp] 318 / 9e-105 AT2G19950 327 / 3e-108 golgin candidate 1 (.1.2) Potri.015G039800 [exp] 62 / 1e-09 AT1G18190 509 / 1e-172 golgin candidate 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09787 [flax] [poplar] Golgin_A5 Golgin subfamily A member 5
Representative CDS sequence Show only first row Show all	>Lus10034941 pacid=23181405 polypeptide=Lus10034941 locus=Lus10034941.g ID=Lus10034941.BGIv1.0 annot-version=v1.0 ATGTATTTTCATGCTCAGAAGAGGCTCCCAAAAGAAGAATCTGCGAGAGCTAGTGAGCCCGTACAAGAGCCCACTAGGATACAACCATCAGAAGCAGATT TAATTAATCGATCTTCCCATTCAGTTCAAAATGATGACAATGCTCCCAGCAGTTCTATAGCTCAAACGAGCAATGAACAGAAACAGACTATTGATATCGT TGCTTCAAGTGTAGCTCTACCAGAATCAACAAATGATCCAGTCGAGCATGAAGCTGAGAGTGTTGAAATTCCTGTAACTGTTACAGACCCTGTGCTACCT TCTTCAAACAGTGAGATTCTCAATAACAAGGCTTCAGATGTCCAAGAAAAGGACCCCTCTTCATCATCACCTGCCAAAGAAGCCCAAGTTGTCAAAGAAC ATGAGCCAATCATTTCTGTGCTTGATACCAGGACAACGGAAATTGATGTTTCCTCAAAGATTGGACAAGAAAAGTCAAGTGAAGATTCTCTTGTATCTAA TGAAAACTTAGCAAAGGATGGAGAGGTTAAGGTAGAATCTCCTGCGCATCAAAAGAAGAATCTCGAACATAAAACCGATGCTTCTCCCAAAAAAATTCAG GAACAACTTGAGGAGGCACAAGGACTGCTCAAGACTGCAAATGCTACTGGTCAGTCAAAAGAGGCTAGACTAGCACGGGTTTGTGCTGGGCTTTCAAGCC GCCTTCAAGAATACAAGTCTGAAAATGCACAACTTGAGGAGCTTTTGATTGCAGAGAGAGAATTGAGCAAATCATGCGAGGCTCGCATAAAACAGCTACA AGAAGACTTGTCTATGTCTAAGCATGAAGTAACAAGAGTAGAGTCAAACATGACTGAGGCTCTAGCAGCAAAGAATGCTGAAATCGCGGCACTTCTTGGT TCCATGGATGCACTTAAAAAACAAGCTGCTTTATCAGAAGGCAGTCTAGCTTCATTACAGGCAAACATGGAGTCTCTAATGAGAAATAGGGAACTGAGCG AGACAAGGATGATGCAGTCTGAGCTTCTACAGGCTTTGCGAGAAGAGTTAGCGTCTGTGGAACGGAGAGCAGAAGAAGAGCGTGTGGCCCACAATGCTAC TAAAAAGTCAGCTATGGAGAGGGAGATGGATCTCGAAAACAGAGCTGTCGAGGCATCCACAGCTCTTGCTAGGACTCAGAGAGTAGCAGATGAAAGGACT GCAAAGGCTTCAGAGCTTGAACAGAAAGTAGCACTACTTGAGGTTGAATGTGCAACAGTAAACCAAGAATTGCAAGATATGGAGGCCCGTGTTCGACGAG GCCAGAAGAAGGCCCCTGAAGAGTTGAACCAATCAATTCAGGCCTGGCAGGAAGAAGTAGAACGTGCACGACAAGGTCAGAGAGACGCTGAAAACAAGCT TTCTTCTCTTGAGACTGAATTGCAGAAACTAAGAGTTGAAATGGCAGCTATGAAAAGAGATGCGGAACACTATTCACGTCAGTGGTTTCACGCATTTGAT TTCATAGATTATGAACTCACTGGTTATAGCGGCCTTCAGGAGCATACGGAGCTTGAAAAACGCTATCGGGAACTAACCGATTTACTGTATTATAAGCAAA CACAATTAGAAACCATGGCCAGTGAAAAGGCTGCAGCAGAATTTCAGTTGGAGAAGGAAATGAAGCGTCTTCAAGAAGCACAGGTTGAGGCTGAAAGAAG CAGAGTTGCCCGTCGCCCATCTACTTCTTGGGAAGAAGATGCTGAAATGAAAACGCTCGAGCCTCTCCCAGTTTACCATCGTCATTTAGTAGGCGCTAGT ATACAGTTGCAAAAGGCAGCAAAGCTATTGGATTCGGGAGCTGCCAGGGCCACGCGATTCTTGTGGCGATACCCAACAGCTCGGCTCATCTTTTTATTCT ACCTGGTATTCGTGCATCTCTTCATGATGTATTTATTGCATCGCCTTCAGGTGCAAGCGGACGATCTTTCGGCCAGAGAAGTGGCGGAGTCGATGGGGCT TTCGGACCCAAAGATGTCGCTAATTGCCGGACGTTGA
AA sequence Show only first row Show all	>Lus10034941 pacid=23181405 polypeptide=Lus10034941 locus=Lus10034941.g ID=Lus10034941.BGIv1.0 annot-version=v1.0 MYFHAQKRLPKEESARASEPVQEPTRIQPSEADLINRSSHSVQNDDNAPSSSIAQTSNEQKQTIDIVASSVALPESTNDPVEHEAESVEIPVTVTDPVLP SSNSEILNNKASDVQEKDPSSSSPAKEAQVVKEHEPIISVLDTRTTEIDVSSKIGQEKSSEDSLVSNENLAKDGEVKVESPAHQKKNLEHKTDASPKKIQ EQLEEAQGLLKTANATGQSKEARLARVCAGLSSRLQEYKSENAQLEELLIAERELSKSCEARIKQLQEDLSMSKHEVTRVESNMTEALAAKNAEIAALLG SMDALKKQAALSEGSLASLQANMESLMRNRELSETRMMQSELLQALREELASVERRAEEERVAHNATKKSAMEREMDLENRAVEASTALARTQRVADERT AKASELEQKVALLEVECATVNQELQDMEARVRRGQKKAPEELNQSIQAWQEEVERARQGQRDAENKLSSLETELQKLRVEMAAMKRDAEHYSRQWFHAFD FIDYELTGYSGLQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMKRLQEAQVEAERSRVARRPSTSWEEDAEMKTLEPLPVYHRHLVGAS IQLQKAAKLLDSGAARATRFLWRYPTARLIFLFYLVFVHLFMMYLLHRLQVQADDLSAREVAESMGLSDPKMSLIAGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	2.8	0.9019
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	5.0	0.9028
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	6.0	0.8933
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	6.7	0.8843
AT1G05960			ARM repeat superfamily protein...		Lus10006583 [exp]	8.1	0.8915
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	8.5	0.8687
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	9.8	0.8878
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	11.2	0.8585
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	12.7	0.8575
AT5G05520			Outer membrane OMP85 family pr...		Lus10040946 [exp]	14.5	0.8727

Compare expression of checked genes

Lus10034941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.